https://github.com/splatlab/squeakr

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Revision Author Date Message Commit Date
8a57916 Merge branch 'development' 08 April 2019, 20:29:46 UTC
16742be Updating lognumslots.sh script based on the new ntCard format. 08 April 2019, 20:29:04 UTC
346f581 Merge branch 'development' 04 January 2019, 19:24:19 UTC
f5d2feb Chaing info to mmap Squeakr file. 04 January 2019, 19:24:04 UTC
88589e9 Merge branch 'master' into development 04 January 2019, 19:21:36 UTC
251dfec Update README.md 21 December 2018, 16:44:29 UTC
4ae3ca9 Merge branch 'development' 06 November 2018, 17:51:35 UTC
ba24903 Removing todo list. 06 November 2018, 17:51:20 UTC
754a28c Merge branch 'development' 06 November 2018, 17:49:40 UTC
12dcdc7 minor change in script. 06 November 2018, 17:49:24 UTC
c1bd187 Merge branch 'refactoring_new_cli' into development 06 November 2018, 17:47:41 UTC
a4d4b0e merge 06 November 2018, 17:45:37 UTC
8e25799 Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli 06 November 2018, 17:43:57 UTC
9acdaf5 Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli 06 November 2018, 17:42:52 UTC
eaad699 more on README. 06 November 2018, 17:42:13 UTC
8ebaff7 more on README. 06 November 2018, 16:29:10 UTC
a401367 more on README. 06 November 2018, 16:28:13 UTC
1d166e1 more on README. 06 November 2018, 16:24:51 UTC
f1a8ced minor error log change. 06 November 2018, 16:05:18 UTC
83df47e Updating README. 06 November 2018, 15:57:00 UTC
d7fd93e Updating README. 06 November 2018, 15:46:09 UTC
a315fe3 minor fix in filtering.. 01 November 2018, 21:17:29 UTC
9bea05f removing a dangling cout.. 01 November 2018, 20:43:41 UTC
ad17e0a minor fix in filtering code for no counts.. 01 November 2018, 20:39:36 UTC
e8b9aa9 Update reader.h Change default `part_size` 01 November 2018, 15:16:09 UTC
797f838 Update count.cc 01 November 2018, 15:15:39 UTC
3adf630 Update gqf_cpp.h fix return type for range() 01 November 2018, 15:14:57 UTC
52c8384 Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli 08 October 2018, 16:49:23 UTC
e55f450 Fixing a k-mer parsing corner case when N is the last base of the read. 08 October 2018, 16:49:17 UTC
0bec58e Changing open flag in qf_usefile. 16 September 2018, 22:21:34 UTC
56bf8a4 minor gqf file fix porting. 13 September 2018, 23:45:54 UTC
3f7c4f6 Porting CQF changes in the initfile and usefile API. 18 August 2018, 02:05:41 UTC
2b9f036 updating todo. 13 August 2018, 22:49:18 UTC
000ef16 Adding info command to Squeakr. 13 August 2018, 18:00:02 UTC
a509af4 minor changes. 11 August 2018, 06:55:26 UTC
9c48515 minor 10 August 2018, 20:28:45 UTC
28b68af minor bug in testing. 10 August 2018, 19:40:21 UTC
ba9e500 fixing minor resize bug. 10 August 2018, 18:18:21 UTC
c8b7f7b Fixing resizing issue. 08 August 2018, 23:47:41 UTC
7bbb6ee minor resizing changes. 08 August 2018, 05:23:19 UTC
e15c583 partial argument check for auto resizing. 07 August 2018, 18:50:02 UTC
24737c4 Porting updated code from CQF. 02 August 2018, 19:55:32 UTC
0d506fc Removing metadata updates in the CQF code. 01 August 2018, 22:41:28 UTC
9392eaa 1. Porting latest CQF code. 2.Fixing some commands issues from the todo file. 3. Fixing author blocks. 01 August 2018, 03:46:24 UTC
97e1d99 todo 31 July 2018, 23:05:09 UTC
9845a02 Adding config file. 26 July 2018, 22:23:24 UTC
a6e1560 Adding a version number in squeakr config. 26 July 2018, 01:32:34 UTC
18edf83 Ported code from the CQF. Adding cutoff and no-count argument. Estimation works properly. 26 July 2018, 00:27:13 UTC
1042510 Estimation code working. 25 July 2018, 07:20:21 UTC
efe3b64 Updating make clean to remove the object dir. 24 July 2018, 00:59:19 UTC
fbc81b7 Ported latest CQF API. Tested on the sample data set. 23 July 2018, 22:38:43 UTC
5f2ff63 Partial commit 17 July 2018, 18:21:11 UTC
8918f96 tested query and listing. 14 July 2018, 06:49:08 UTC
3113ae8 1. Removing warning flags. 2. Adding cutoff. 14 July 2018, 06:40:26 UTC
5424c50 Removing unwanted code. 26 June 2018, 01:11:06 UTC
3c95ad4 Adding cutoff argument. 26 June 2018, 00:42:26 UTC
48a4145 Adding cutoff argument. 26 June 2018, 00:41:55 UTC
55f0f3f fixing a small bug in k-mer parsing. 26 June 2018, 00:35:27 UTC
6780878 Adding code for write k-mer size at the end of the file. 26 June 2018, 00:03:03 UTC
19748c0 Adding listing k-mers during query. 25 June 2018, 22:22:42 UTC
7438802 fixing list API. 25 June 2018, 21:32:45 UTC
79d8bfa some more fixes in the CLI 25 June 2018, 21:28:18 UTC
03aee16 some more fixes in the CLI 25 June 2018, 21:26:09 UTC
64161f1 Tested listing kmers. 02 June 2018, 01:08:33 UTC
8d7a80f Minor bug. 02 June 2018, 00:02:56 UTC
9b9b095 Changed query API. 02 June 2018, 00:00:48 UTC
cbbf9df Adding logger to time. 01 June 2018, 06:25:18 UTC
3a74eae Adding logger to time. 01 June 2018, 06:23:53 UTC
61cfa12 Adding console logging to other files. 01 June 2018, 06:17:12 UTC
604dc85 Using logger to log. 01 June 2018, 06:10:07 UTC
a072e10 Removed auto resize. 31 May 2018, 17:13:14 UTC
4ab19dc Making size and threads optional. 31 May 2018, 00:49:57 UTC
245fda6 Test counting. 30 May 2018, 22:45:32 UTC
4ea7f50 Testing counting now. 30 May 2018, 20:29:40 UTC
8496787 More refactoring. Code compiles now. 30 May 2018, 19:52:58 UTC
333702c More refactoring. Getting closer. 30 May 2018, 06:21:36 UTC
35325d2 More refactoring. Getting closer. 29 May 2018, 22:35:39 UTC
db42e05 checking in intermediate code. 11 May 2018, 19:34:35 UTC
a486bf4 Merge pull request #28 from sjackman/patch-1 qf_serialize: Add the filename to the error message 02 March 2018, 20:52:51 UTC
dee0459 qf_serialize: Add filename to error message 27 February 2018, 16:59:24 UTC
684ebb7 Merge branch 'development' 25 January 2018, 18:59:16 UTC
6507097 Adding instructions to use the script to calculate the log of the number of slots. 25 January 2018, 18:55:54 UTC
63d06de Adding the script to estmiate the size of the CQF using the output from ntCard. 25 January 2018, 18:51:34 UTC
6741efd update clipp 07 December 2017, 15:38:02 UTC
53c0ce4 update clipp 07 December 2017, 15:37:26 UTC
5a17a02 update clipp 05 December 2017, 18:38:26 UTC
29a8ee5 update clipp 05 December 2017, 18:38:02 UTC
485b9d5 Merge branch 'master' of github.com:splatlab/squeakr 30 November 2017, 16:41:59 UTC
c27fb52 Merge branch 'development' 30 November 2017, 16:41:05 UTC
f9436cd Merge branch 'development' 30 November 2017, 16:40:43 UTC
0217339 Updating README. 30 November 2017, 16:38:46 UTC
27e9b49 Fixing a minor bug in inner product CLI. 30 November 2017, 16:33:39 UTC
c9dca4b Addig CLI interface to other two commands. 30 November 2017, 16:25:46 UTC
bd6ade1 Merge branch 'development' 18 November 2017, 19:44:19 UTC
110be94 Merge branch 'master' of https://github.com/splatlab/squeakr 18 November 2017, 19:43:39 UTC
3d71cf0 Merge branch 'development' 18 November 2017, 19:43:14 UTC
4ca288b Update README.md 18 November 2017, 19:42:55 UTC
ac4777b Merge branch 'development' 18 November 2017, 19:40:20 UTC
cddfc92 merge 18 November 2017, 19:36:54 UTC
b2e4489 hold 18 November 2017, 19:34:49 UTC
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