| f2c7afd | Aurélie Siberchicot | 31 March 2025, 09:27:07 UTC | Update codemeta.json | 31 March 2025, 09:27:07 UTC |
| d821959 | Aurélie Siberchicot | 31 March 2025, 09:26:13 UTC | Correct misprints | 31 March 2025, 09:26:13 UTC |
| 59980e0 | Aurélie Siberchicot | 04 March 2025, 10:39:12 UTC | Update README.md: update badges | 04 March 2025, 10:39:12 UTC |
| 33b592b | Aurélie Siberchicot | 28 February 2025, 14:25:51 UTC | Add 'codemeta.json' for Software Heritage | 28 February 2025, 14:25:51 UTC |
| 708da41 | Aurélie Siberchicot | 28 February 2025, 13:28:43 UTC | Update version number | 28 February 2025, 13:28:43 UTC |
| 651cebb | Aurélie Siberchicot | 28 February 2025, 13:25:09 UTC | Add a status badge in README | 28 February 2025, 13:25:27 UTC |
| 8bf15a3 | Marie-Laure DELIGNETTE-MULLER | 18 February 2025, 15:17:23 UTC | update of the todolist | 18 February 2025, 15:17:23 UTC |
| 9cd4d9a | Marie-Laure DELIGNETTE-MULLER | 28 January 2025, 16:43:35 UTC | update of the todo list | 28 January 2025, 16:43:35 UTC |
| 835d405 | Marie-Laure DELIGNETTE-MULLER | 28 January 2025, 16:18:14 UTC | Add of the meanplot function in the share, with examples of use (to be improved, enlarged, and implemented in DRomics) | 28 January 2025, 16:18:14 UTC |
| 909a012 | Aurélie Siberchicot | 04 December 2024, 14:48:28 UTC | Update README adding intership offer | 04 December 2024, 14:48:28 UTC |
| 312d19b | Aurélie Siberchicot | 04 December 2024, 14:31:27 UTC | Update README | 04 December 2024, 14:31:35 UTC |
| 2863adb | Aurélie Siberchicot | 02 December 2024, 09:08:56 UTC | Update README.md | 02 December 2024, 09:08:56 UTC |
| ce58e5d | Aurélie Siberchicot | 02 December 2024, 09:08:40 UTC | Update README.md | 02 December 2024, 09:08:40 UTC |
| 66d0238 | Aurélie Siberchicot | 16 October 2024, 09:19:19 UTC | Update version number | 16 October 2024, 09:19:19 UTC |
| 9c7f2ff | Aurélie Siberchicot | 16 October 2024, 07:23:05 UTC | Update the DRomicsInterpreter shiny app: update the text of a help button | 16 October 2024, 07:23:05 UTC |
| 7921137 | Aurélie Siberchicot | 14 October 2024, 10:59:29 UTC | Update version number | 14 October 2024, 10:59:29 UTC |
| 1645dfb | Aurélie Siberchicot | 14 October 2024, 08:47:12 UTC | Update the DRomicsInterpreter shiny app: correct a misprint | 14 October 2024, 08:47:12 UTC |
| 276c2e0 | Aurélie Siberchicot | 11 October 2024, 09:32:24 UTC | Update DRomicsInterpreter shiny app: add information about the format required for DRomics output file as input | 11 October 2024, 09:32:24 UTC |
| 17897fc | Aurélie Siberchicot | 09 October 2024, 11:45:35 UTC | Update DRomicsInterpreter shiny app: better defensive programming for input files | 09 October 2024, 11:45:35 UTC |
| 7be4f88 | Aurélie Siberchicot | 09 October 2024, 09:05:36 UTC | Update DRomicsInterpreter shiny app: update some texts when importing data | 09 October 2024, 09:05:36 UTC |
| a26c047 | Aurélie Siberchicot | 08 October 2024, 12:46:37 UTC | Add information in README to update Bioconductor packages if already installed | 08 October 2024, 12:46:37 UTC |
| 5c95b66 | Aurélie Siberchicot | 08 October 2024, 12:37:10 UTC | Update the DRomicsInterpreter shiny app: resize the plot area for trendplot and sensitivityplot, the height is now proportional to the number of annotations displayed | 08 October 2024, 12:37:10 UTC |
| 07c2ea1 | Aurélie Siberchicot | 08 October 2024, 07:48:32 UTC | Fix a bug in the defensive programming of 'curvesplot' | 08 October 2024, 07:48:32 UTC |
| 3a52d51 | Aurélie Siberchicot | 01 October 2024, 15:14:22 UTC | Replace 'library()' with 'require()' which is (about 5 times) faster | 01 October 2024, 15:14:22 UTC |
| 3f57969 | Aurélie Siberchicot | 30 September 2024, 14:36:49 UTC | Update R-CMD-check workflow: remove uploading artefact | 30 September 2024, 14:36:49 UTC |
| ae5687b | Aurélie Siberchicot | 27 September 2024, 09:18:26 UTC | Update R-CMD-check workflow: add checking artefacts | 27 September 2024, 09:18:26 UTC |
| 87014c7 | Aurélie Siberchicot | 26 September 2024, 13:30:05 UTC | Revert the lastest changes in R-CMD-check which not fix the 'svglite' installation issue | 26 September 2024, 13:30:05 UTC |
| f6ead1b | Aurélie Siberchicot | 26 September 2024, 13:09:41 UTC | Update R-CMD-check workflow: reinstall 'pkg-config' in Mac to fix the 'svglite' installation issue | 26 September 2024, 13:09:41 UTC |
| a1f5371 | Aurélie Siberchicot | 26 September 2024, 12:54:01 UTC | Update R-CMD-check workflow: install 'pkg-config' on Mac to fix the svglite installation issue | 26 September 2024, 12:54:01 UTC |
| ff6b159 | Aurélie Siberchicot | 26 September 2024, 12:22:25 UTC | Update the R-CMD-check workflow: add 'libpng' for Mac | 26 September 2024, 12:22:25 UTC |
| f3c7d31 | Marie-Laure DELIGNETTE-MULLER | 25 September 2024, 12:15:46 UTC | last bug fixed in tests. The automatic check of all test files seems OK | 25 September 2024, 12:15:46 UTC |
| 9815c99 | Marie-Laure DELIGNETTE-MULLER | 25 September 2024, 09:36:52 UTC | bug fixed in testwithRNAseq (due to change of default option in curvesplot()) | 25 September 2024, 09:36:52 UTC |
| 99a9385 | Marie-Laure DELIGNETTE-MULLER | 25 September 2024, 08:22:01 UTC | Renaming and annotating of test files | 25 September 2024, 08:22:01 UTC |
| 92726ec | Aurélie Siberchicot | 19 September 2024, 07:59:04 UTC | Move all tests files in the testthat folder | 19 September 2024, 07:59:04 UTC |
| 3a4f32b | Marie-Laure DELIGNETTE-MULLER | 12 September 2024, 14:30:10 UTC | correction of bugs in test files that were used during the development and that were not tested at each modification ofthe package (pb due to changing names of arguments, or change in defensive programmation, or in default values of some arguments) | 12 September 2024, 14:30:10 UTC |
| 995a71e | Marie-Laure DELIGNETTE-MULLER | 12 September 2024, 12:58:11 UTC | fix a bug : in case of !transfo.blind, fdose was not defined in the corresponding if | 12 September 2024, 12:58:11 UTC |
| ec9b4c5 | Marie-Laure DELIGNETTE-MULLER | 11 September 2024, 15:13:59 UTC | bug fixed in tests (to continue) | 11 September 2024, 15:13:59 UTC |
| d604940 | Aurélie Siberchicot | 21 August 2024, 06:26:55 UTC | Update R code after running 'lintr::lint()' which detects style, syntax and semantic issues | 21 August 2024, 06:26:55 UTC |
| 38a838d | Aurélie Siberchicot | 02 August 2024, 12:49:33 UTC | Manage the last line of files | 02 August 2024, 12:49:33 UTC |
| 97a52c8 | Aurélie Siberchicot | 02 August 2024, 09:38:49 UTC | Add a lintr configuration file | 02 August 2024, 09:38:49 UTC |
| 25360b4 | Aurélie Siberchicot | 02 August 2024, 09:37:28 UTC | Add a name to all the chuncks in the vignette | 02 August 2024, 09:37:28 UTC |
| 13d5451 | Aurélie Siberchicot | 23 July 2024, 14:22:28 UTC | Update package anchors for Rd \link{} targets | 23 July 2024, 14:22:28 UTC |
| 69d1451 | Aurélie Siberchicot | 23 July 2024, 14:21:25 UTC | Update version number | 23 July 2024, 14:21:25 UTC |
| c11c2df | Aurélie Siberchicot | 22 July 2024, 13:54:31 UTC | Replace '1:nrow(...)' by 'seq_len(nrow(...))' which is likely to be right in the empty edge case | 22 July 2024, 13:54:31 UTC |
| cbe6109 | Aurélie Siberchicot | 22 July 2024, 13:49:27 UTC | Replace 'any(is.na())' by 'anyNA()' which is much more efficient | 22 July 2024, 13:49:27 UTC |
| f29072d | Aurélie Siberchicot | 22 July 2024, 13:46:54 UTC | Replace 'any(! )' by '!all( )' which is much more efficient | 22 July 2024, 13:46:54 UTC |
| 8f82366 | Aurélie Siberchicot | 22 July 2024, 12:14:46 UTC | Clean up the code where the ‘paste’ function is used | 22 July 2024, 12:14:50 UTC |
| df785ca | Aurélie Siberchicot | 19 July 2024, 12:42:42 UTC | Update README.md | 19 July 2024, 12:42:42 UTC |
| 917ee27 | Aurélie Siberchicot | 15 July 2024, 14:02:41 UTC | Update R-CMD-check.yaml | 15 July 2024, 14:02:41 UTC |
| a2cea98 | Aurélie Siberchicot | 18 June 2024, 14:37:48 UTC | Update README.md: add a visual of the cheat sheet | 18 June 2024, 14:37:48 UTC |
| be69aa2 | Aurélie Siberchicot | 18 June 2024, 14:24:02 UTC | Update the DRomicsInterpreter shiny app: add a 'scaling' checkbox for curvesplot | 18 June 2024, 14:24:02 UTC |
| bfa5884 | Aurélie Siberchicot | 18 June 2024, 14:23:07 UTC | Correct a misprint | 18 June 2024, 14:23:07 UTC |
| b5e8b0e | Aurélie Siberchicot | 18 June 2024, 09:43:04 UTC | Update README after transfer to lbbe-software | 18 June 2024, 09:43:04 UTC |
| bc0d3ab | Aurélie Siberchicot | 18 June 2024, 09:41:04 UTC | Update the github repo adress after tranfer to lbbe-software | 18 June 2024, 09:41:04 UTC |
| 70cdb91 | Aurélie Siberchicot | 11 June 2024, 09:14:41 UTC | Format the NEWS file | 11 June 2024, 09:14:41 UTC |
| 36cff31 | Aurélie Siberchicot | 11 June 2024, 08:55:18 UTC | Format the NEWS file | 11 June 2024, 08:55:18 UTC |
| a38f0ca | Aurélie Siberchicot | 11 June 2024, 08:51:56 UTC | Update the TODO list | 11 June 2024, 08:51:56 UTC |
| df5e8ec | Aurélie Siberchicot | 11 June 2024, 08:41:53 UTC | Update the DRomicsInterpreter shiny app: 'curvesplot' is now in log scale by default and the default minimal dose is calculated as in the package | 11 June 2024, 08:41:53 UTC |
| 27fc588 | Aurélie Siberchicot | 10 June 2024, 14:12:14 UTC | Update R script for cheat sheet | 10 June 2024, 14:12:14 UTC |
| 493c2f1 | Aurélie Siberchicot | 10 June 2024, 14:11:14 UTC | Update figures in the cheat sheet | 10 June 2024, 14:11:14 UTC |
| d10c18e | Aurélie Siberchicot | 10 June 2024, 13:37:58 UTC | Update the DRomics-shiny app: add of information on the background dose used for the anchoring data example | 10 June 2024, 13:37:58 UTC |
| 76d74c1 | Marie-Laure DELIGNETTE-MULLER | 10 June 2024, 13:31:16 UTC | Add the Information criterion value of the null model (in drcfit output) and change their names AIC in InfoCrit | 10 June 2024, 13:31:16 UTC |
| a2e989d | Marie-Laure DELIGNETTE-MULLER | 07 June 2024, 15:48:02 UTC | add "in log scale" on the label of all x axis where it is the case and plot anchoring data by default in dose log scale (argument added in the corresponding plot function) | 07 June 2024, 15:48:02 UTC |
| 318d2e6 | Marie-Laure DELIGNETTE-MULLER | 06 June 2024, 14:01:25 UTC | Changes in curvesplot to fix a default log scale for the dose, with xmin and xmax calculated from BMD values, and minor changes in the vignette and targetplot.Rd, linked with dose log scales | 06 June 2024, 14:01:25 UTC |
| e633d23 | Aurélie Siberchicot | 03 June 2024, 13:16:26 UTC | Update the todo list | 03 June 2024, 13:16:26 UTC |
| 935a768 | Aurélie Siberchicot | 03 June 2024, 13:16:11 UTC | Update the cheat sheet and the figures in it | 03 June 2024, 13:16:11 UTC |
| cdf6f6a | Aurélie Siberchicot | 31 May 2024, 12:59:30 UTC | Update the R-CMD-check workflow | 31 May 2024, 12:59:30 UTC |
| db32290 | Marie-Laure DELIGNETTE-MULLER | 23 May 2024, 11:42:01 UTC | add argument deltaAICminfromnullmodel in drcfit() | 23 May 2024, 11:42:01 UTC |
| 26a6c13 | Aurélie Siberchicot | 15 May 2024, 10:50:06 UTC | Update of the vignette header | 15 May 2024, 10:50:06 UTC |
| 608198b | Aurélie Siberchicot | 13 May 2024, 08:04:41 UTC | Update pkgdown workflow | 13 May 2024, 08:04:41 UTC |
| 1438717 | Aurélie Siberchicot | 30 April 2024, 10:27:54 UTC | Update pkgdown workflow | 30 April 2024, 10:27:54 UTC |
| c6574f0 | Aurélie Siberchicot | 30 April 2024, 08:25:28 UTC | Update the pkgdown workflow | 30 April 2024, 08:25:28 UTC |
| af48ea3 | Aurélie Siberchicot | 30 April 2024, 08:23:40 UTC | Update the pkgdown workflow | 30 April 2024, 08:23:40 UTC |
| d2b0ab4 | Aurélie Siberchicot | 27 April 2024, 12:37:11 UTC | Update the R-CMD-check workflow: install openssl for macos | 27 April 2024, 12:37:11 UTC |
| b2d4b4d | Aurélie Siberchicot | 27 April 2024, 12:11:35 UTC | Update the R-CMD-check workflow | 27 April 2024, 12:11:35 UTC |
| 7cb9ea4 | Marie-Laure DELIGNETTE-MULLER | 25 April 2024, 12:17:08 UTC | forgotten in the previous commit | 25 April 2024, 12:17:08 UTC |
| e7c798b | Marie-Laure DELIGNETTE-MULLER | 25 April 2024, 12:16:52 UTC | update of the news, the todolist and add of a script for Venn diagram with 3 sets in the share | 25 April 2024, 12:16:52 UTC |
| 23a79d3 | Marie-Laure DELIGNETTE-MULLER | 25 April 2024, 12:16:05 UTC | - change the default value of range4boxplot (from 1e6 to 0) to have whiskers going to the extrems in anay case - add data.sd in the output of ...data() functions (RNAseqdata(), ...) | 25 April 2024, 12:16:05 UTC |
| 41dbf64 | Marie-Laure DELIGNETTE-MULLER | 25 April 2024, 12:08:26 UTC | fix a BUG by really taking into account argument samplenames in formadata4DRomics | 25 April 2024, 12:08:26 UTC |
| e2c7047 | Aurélie Siberchicot | 31 January 2024, 08:27:52 UTC | Update version number | 31 January 2024, 08:27:52 UTC |
| 6aebbbe | Aurélie Siberchicot | 31 January 2024, 08:21:14 UTC | Update WORDLIST | 31 January 2024, 08:21:14 UTC |
| c20ccef | Aurélie Siberchicot | 24 January 2024, 13:12:35 UTC | Update URL | 24 January 2024, 13:12:35 UTC |
| e85d1a0 | Aurélie Siberchicot | 24 January 2024, 13:11:02 UTC | Update version number | 24 January 2024, 13:11:02 UTC |
| 0ac0177 | Aurélie Siberchicot | 23 January 2024, 20:29:43 UTC | Update the Dromics-shiny app: correct a bug in the plot of 'bmdplotwithgradient' | 23 January 2024, 20:29:43 UTC |
| 4ca1cb1 | Aurélie Siberchicot | 23 January 2024, 15:31:02 UTC | Update the DRomics-shiny app: correct a misprint in the shared code in the last step | 23 January 2024, 15:31:02 UTC |
| d4de234 | Aurélie Siberchicot | 18 December 2023, 15:37:24 UTC | Update the DRomicsInterpreter-shiny app: manage the layout | 18 December 2023, 15:37:24 UTC |
| e917b56 | Aurélie Siberchicot | 18 December 2023, 15:20:41 UTC | Udpate the TODO list | 18 December 2023, 15:20:41 UTC |
| fa2e507 | Aurélie Siberchicot | 18 December 2023, 15:19:37 UTC | Update the DRmics-shiny app: add a note about the decimal separator in input files | 18 December 2023, 15:19:37 UTC |
| b78e835 | Aurélie Siberchicot | 18 December 2023, 12:44:12 UTC | Update the DRomics-shiny app: manage the BMD plot in step 4 | 18 December 2023, 12:44:12 UTC |
| 5bae3bc | Aurélie Siberchicot | 15 December 2023, 09:48:22 UTC | Update the DRomicsInterpreter-shiny app: reduce and optimize the 'bmdplot' and 'bmdplotwithgradient' displays | 15 December 2023, 09:48:22 UTC |
| 3939e3d | Aurélie Siberchicot | 15 December 2023, 08:48:50 UTC | Update the DRomicsInterpreter-shiny app: reduce and optimize the 'sensitivityplot' and 'trendplot' displays | 15 December 2023, 08:48:50 UTC |
| 86019b2 | Aurélie Siberchicot | 14 December 2023, 20:05:29 UTC | Update the DRomicsInterpreter-shiny app: reduce and optimize the 'curvesplot' display | 14 December 2023, 20:05:29 UTC |
| 9a2a222 | Aurélie Siberchicot | 14 December 2023, 10:29:23 UTC | Rename some variables in the shany app | 14 December 2023, 10:29:23 UTC |
| 127113a | Aurélie Siberchicot | 14 December 2023, 10:28:40 UTC | Remove some unused code | 14 December 2023, 10:28:40 UTC |
| 0869057 | Aurélie Siberchicot | 14 December 2023, 10:27:46 UTC | Update DRomicsInterpreter-shiny app: manage the downloaded plot size | 14 December 2023, 10:27:46 UTC |
| f0129b7 | Aurélie Siberchicot | 14 December 2023, 09:41:22 UTC | Update DRomicsInterpreter-shiny: enlarge texts in plots | 14 December 2023, 09:41:22 UTC |
| 123f912 | Aurélie Siberchicot | 14 December 2023, 06:21:42 UTC | Update the DRomicsInterpreter-shiny app: move 'Run' buttons | 14 December 2023, 06:21:42 UTC |
| 52f090a | Aurélie Siberchicot | 13 December 2023, 16:20:46 UTC | Update the DRomicsInterpreter-shiny app: manage the layout for curves plot (step 4) | 13 December 2023, 16:20:46 UTC |
| 37a3bcc | Aurélie Siberchicot | 13 December 2023, 16:15:15 UTC | Update the DRomicsInterpreter-shiny app: manage the layout of the BMD plot and the BMD plot with gradient (step 3) | 13 December 2023, 16:15:15 UTC |
| 3a8c313 | Aurélie Siberchicot | 13 December 2023, 15:18:38 UTC | Update the DRomicsInterpreter-shiny app: manage the layout of the trend plot and the sensitivity plot | 13 December 2023, 15:18:38 UTC |
