https://github.com/isaacovercast/easySFS

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Revision Author Date Message Commit Date
ce51033 Add example vcf file 28 October 2021, 13:59 UTC
e75a00e Add simdata notebook 18 September 2021, 12:08 UTC
7e276c1 cleanup notebooks 18 September 2021, 12:06 UTC
b866269 Allow to set population order of output sfs 05 February 2021, 17:14 UTC
a9bab35 Be more careful with overwriting the outdir 28 January 2021, 09:21 UTC
844e833 Fix raw_input reference 21 January 2021, 16:13 UTC
8b991eb fix a bug in fsc joint sfs files where the pop data was transposed 29 August 2020, 13:39 UTC
c2b26c5 Update README.md 08 April 2020, 18:31 UTC
e655987 Update README.md 08 April 2020, 18:28 UTC
0a9bc74 Update README.md 19 March 2020, 15:49 UTC
bdcd9c0 Fix a bug in opening gzip vcf files (open in 'rt' mode to fix). 19 February 2020, 16:12 UTC
a258885 fix open rU mode deprecation warning 15 February 2020, 17:08 UTC
66a594a Update README.md 15 February 2020, 17:08 UTC
aaf80ea remove xrange 12 September 2019, 18:00 UTC
128d82b Fix 2d sfs for fsc2 18 July 2019, 16:07 UTC
4e5b9a5 Transpose the pop0/pop1 ids in the fsc2 joint SFS 14 July 2019, 08:52 UTC
1132100 Fix removing samples in list not in vcf - Thanks to Annabel Beichman 06 December 2018, 23:31 UTC
c7261e6 Update README.md 15 October 2018, 21:38 UTC
02f2082 update the usage 08 October 2018, 17:24 UTC
5e84efd ignore .gz files 13 September 2018, 22:52 UTC
a051ec6 Merge branch 'master' of https://github.com/isaacovercast/easySFS 13 September 2018, 22:51 UTC
6ccf754 Adding momi sfs export code even though it doesn't work right now. 13 September 2018, 22:53 UTC
75991e2 Show possible preview keeping all samples. 13 September 2018, 22:51 UTC
c7b9e8e Updating notebooks 13 September 2018, 22:47 UTC
8cf6d05 Fix a hideous bug counting heterozygotes 09 September 2018, 22:27 UTC
420e6cb fix momi nb 09 September 2018, 22:26 UTC
9ac5761 updates to momi analysis nb 09 September 2018, 22:24 UTC
03b9f36 update momi nb 04 September 2018, 00:56 UTC
8b5e016 Merge branch 'master' of https://github.com/isaacovercast/easySFS 04 September 2018, 00:56 UTC
3443059 add simdata nb 04 September 2018, 00:56 UTC
910c9b3 add momi analysis nb 04 September 2018, 00:55 UTC
cc20f4c adding notebook 03 September 2018, 21:53 UTC
e1ed1a5 Naming fix for MAF/DAF fsc files 31 August 2018, 21:29 UTC
727ace9 Add a more informative error message if the input vcf is malformed. 05 April 2018, 14:45 UTC
ac7e411 typo 03 April 2018, 12:43 UTC
9c238bd Set default mask corners to true. 07 March 2018, 15:50 UTC
ef57f46 Delete leuco_pops.txt 27 October 2017, 15:55 UTC
b223517 Delete leuco_1200.vcf 27 October 2017, 15:55 UTC
1206be3 Add support for true haploid calls. 04 August 2017, 15:44 UTC
81c66aa Populations are written out to SFS in the order they occur in the pops file. 19 April 2017, 13:21 UTC
b427d0e Fix readme errors. 19 April 2017, 11:00 UTC
ddf6f88 oops fixed broken jointMAF format. 30 November 2016, 19:06 UTC
3babf8c Added dtype flag to write out int bins instead of float. 18 November 2016, 04:11 UTC
94f9f19 Adding support for gzipped vcf files. 18 November 2016, 00:30 UTC
87753f6 Add the --unfolded flag to support polarized vcf. 21 October 2016, 18:25 UTC
50d24c1 Clarified some of the docs. 21 October 2016, 18:07 UTC
9f8162a Merge branch 'master' of https://github.com/isaacovercast/easySFS 11 October 2016, 16:04 UTC
12b8d4a Fixed a ploidy bug in preview, and added support for vcf files w/ genotype info. 11 October 2016, 16:04 UTC
ee71643 Better handling for removing diffs btwn populations file and inds in the vcf 16 September 2016, 20:49 UTC
aa2acfd Update README.md 15 August 2016, 21:16 UTC
6d2c61a Merge branch 'master' of https://github.com/isaacovercast/easySFS 15 August 2016, 21:05 UTC
7447413 cosmetic change to usage for -a 15 August 2016, 21:05 UTC
9e01b3c Update README.md 15 August 2016, 21:02 UTC
cd30577 Update README.md 15 August 2016, 20:57 UTC
d2a5fc7 More info about output files 15 August 2016, 20:16 UTC
b789116 Fixed --preview output, and made --preview not try to write the datadict file 15 August 2016, 19:33 UTC
cbf684a More info on input file formats 15 August 2016, 19:25 UTC
c52c4e0 cosmetic change 15 August 2016, 19:19 UTC
ccda059 Updating example run docs 15 August 2016, 19:18 UTC
5781620 More docs 15 August 2016, 19:01 UTC
4fe4c7e Adding some meager docs 15 August 2016, 18:55 UTC
1ebf38a Initial commit of easySFS script and example files 15 August 2016, 18:08 UTC
cd7045f Initial commit 15 August 2016, 18:07 UTC
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