| e9ed2ce | Johnathan Wong | 25 January 2020, 00:11:36 UTC | azure: CI on macOS | 25 January 2020, 00:11:36 UTC |
| e8d401c | Johnathan Wong | 24 January 2020, 23:25:27 UTC | release 1.2.0 (#37) | 24 January 2020, 23:25:27 UTC |
| e2eafd5 | Johnathan Wong | 24 January 2020, 22:42:01 UTC | Count Gap Seed (#30) * add gap seed estimation * nthash.hpp: revert changes to table * ntcard.hpp: fix format * ntcard.hpp: remove comment * ntcard.hpp: break when multiple is specified with -g * ntcard.cpp: gap seed for fa and sam * ntcard: update headers * ntcard: clang-formatted * vendor: undo changes * Common: remove stHashIterator * configure.ac: revert * vendor/Makefile.am: add stHashIterator.hpp * Makefile.am: remove m4 * vendor: undo changes * ntcard: c++03 compliant * clang-format: c++03 compliant * clang-format: correct syntax * clang-format: capitalization * ntcard: remove empty line * add gap seed test | 24 January 2020, 22:42:01 UTC |
| 24d35c0 | Johnathan Wong | 23 January 2020, 17:22:40 UTC | use ntHash 2.1.0 (#36) * The files in ntHash come from: https://github.com/bcgsc/ntHash Release 2.1.0 Downloaded using https://github.com/bcgsc/ntHash/archive/2.1.0.zip * ntcard.cpp: use new ntHashIterator * set up make distcheck CI * azure: run make distcheck * add Makefile needed for make distcheck * Makefile.am: clean up downloaded files * Makefile.am: add rm to code * Makefile.am: use tabs * Common: remove nthash.hpp * Makefile.am: remove Common/nthash.hpp * Common: remove ntHashIterator.hpp * nthll.cpp: use vendored ntHashIterator.hpp * Makefile.am: revert to previous ordering * vendor/Makefile.am: add nthash.hpp | 23 January 2020, 17:22:40 UTC |
| 8eb710f | Hamid Mohamadi | 22 January 2020, 14:34:15 UTC | Merge pull request #35 from bcgsc/low_kmer_check ntcard: fix edge case of no kmer sampled | 22 January 2020, 14:34:15 UTC |
| ae1d153 | Johnathan Wong | 22 January 2020, 00:17:05 UTC | ntcard: fix edge case of no kmer sampled | 22 January 2020, 00:17:05 UTC |
| ed026f4 | Johnathan Wong | 16 January 2020, 00:44:37 UTC | azure: add display name | 16 January 2020, 16:54:14 UTC |
| ba3e4d2 | Johnathan Wong | 16 January 2020, 00:41:47 UTC | add clang-format specification | 16 January 2020, 16:54:14 UTC |
| 5bc0192 | Johnathan Wong | 16 January 2020, 00:39:11 UTC | clang-formatted ntcard.cpp | 16 January 2020, 16:54:14 UTC |
| beba4f4 | Johnathan Wong | 16 January 2020, 00:16:54 UTC | add rna integration test | 16 January 2020, 00:25:21 UTC |
| 9f53364 | Johnathan Wong | 15 January 2020, 23:24:40 UTC | Merge pull request #32 from bcgsc/integration_test Integration test | 15 January 2020, 23:24:40 UTC |
| fbe5a31 | Johnathan Wong | 15 January 2020, 23:20:50 UTC | azure: remove unecessary code | 15 January 2020, 23:20:50 UTC |
| 36b91df | Johnathan Wong | 15 January 2020, 23:20:09 UTC | add integration test | 15 January 2020, 23:20:09 UTC |
| 0863ce9 | Johnathan Wong | 15 January 2020, 22:50:06 UTC | Merge pull request #31 from bcgsc/azure-pipelines Set up CI with Azure Pipelines | 15 January 2020, 22:50:06 UTC |
| ef5699b | Johnathan Wong | 15 January 2020, 22:43:30 UTC | azure: remove distcheck | 15 January 2020, 22:43:30 UTC |
| 48b4325 | Johnathan Wong | 15 January 2020, 22:40:43 UTC | azure: add compilation | 15 January 2020, 22:40:43 UTC |
| d3752db | Lauren Coombe | 15 January 2020, 21:52:30 UTC | Set up CI with Azure Pipelines [skip ci] | 15 January 2020, 21:52:30 UTC |
| d6f832b | kmnip | 10 December 2019, 23:55:52 UTC | fixes support for uracil bases | 10 December 2019, 23:55:52 UTC |
| 2a48882 | mohamadi | 25 October 2019, 21:11:25 UTC | Supporting Uracil for RNA-seq data | 25 October 2019, 21:11:25 UTC |
| cdf62de | mohamadi | 10 February 2019, 20:46:05 UTC | nthash.hpp: added precomputed seed for faster rolling | 10 February 2019, 20:46:05 UTC |
| 67f6e76 | mohamadi | 16 October 2018, 18:59:16 UTC | Modified README with mandatory prefix/output option | 16 October 2018, 18:59:16 UTC |
| dd4aea4 | mohamadi | 16 October 2018, 18:45:40 UTC | Fixing bugs and typos and updatig help and version messages | 16 October 2018, 18:45:40 UTC |
| c9e66cc | mohamadi | 12 October 2018, 22:15:45 UTC | README and version updated to 1.1.0 | 12 October 2018, 22:15:45 UTC |
| 0272ffb | mohamadi | 04 October 2018, 21:50:31 UTC | Added option for output to a single file | 04 October 2018, 21:50:31 UTC |
| a8105d9 | mohamadi | 04 September 2018, 04:39:06 UTC | nthash.hpp: Increased periodicity of ntHash | 04 September 2018, 04:39:06 UTC |
| e3feb96 | mohamadi | 13 April 2018, 01:07:45 UTC | Print error for FASTA/FASTQ file without header | 13 April 2018, 01:07:45 UTC |
| 9cc1dcf | Shaun Jackman | 01 March 2018, 23:31:19 UTC | brew install brewsci/bio/ntcard | 01 March 2018, 23:34:44 UTC |
| 801b16d | mohamadi | 29 January 2018, 15:54:39 UTC | Updated date | 29 January 2018, 15:54:39 UTC |
| e587d4d | Hamid Mohamadi | 31 December 2017, 16:50:56 UTC | Update README.md | 31 December 2017, 16:50:56 UTC |
| 7a4bcc2 | Hamid Mohamadi | 29 December 2017, 22:26:05 UTC | Update README.md | 29 December 2017, 22:26:05 UTC |
| a3598bd | Hamid Mohamadi | 29 December 2017, 22:25:31 UTC | Update README.md | 29 December 2017, 22:25:31 UTC |
| 4c4412a | mohamadi | 28 November 2017, 22:16:40 UTC | configure.ac: updating ntcard version | 28 November 2017, 22:16:40 UTC |
| fb05b32 | mohamadi | 17 August 2017, 16:44:37 UTC | Changing License to MIT | 17 August 2017, 16:44:37 UTC |
| 4a15865 | Hamid Mohamadi | 17 August 2017, 16:38:47 UTC | Delete COPYRIGHT | 17 August 2017, 16:38:47 UTC |
| 73dba86 | mohamadi | 17 August 2017, 16:37:52 UTC | Changing license from GPLv3 to MIT License | 17 August 2017, 16:37:52 UTC |
| 1cf3557 | mohamadi | 09 August 2017, 17:56:41 UTC | Checking user set required -k parameter | 09 August 2017, 17:56:41 UTC |
| e694ac8 | mohamadi | 25 July 2017, 09:24:24 UTC | nthash.hpp: improving rotate ops | 25 July 2017, 09:24:24 UTC |
| c5a5fb2 | mohamadi | 28 April 2017, 16:21:33 UTC | updated citation | 28 April 2017, 16:21:33 UTC |
| 7132d77 | mohamadi | 20 April 2017, 23:57:33 UTC | ntcard.cpp: fixing the bug to pass more than 15 k values | 20 April 2017, 23:57:33 UTC |
| f50f8d1 | mohamadi | 31 March 2017, 17:10:03 UTC | nthash.hpp: formatted | 31 March 2017, 17:10:03 UTC |
| ea75b66 | mohamadi | 29 March 2017, 18:52:30 UTC | nthll, ntcard: remove extra line | 29 March 2017, 18:52:30 UTC |
| ff76406 | mohamadi | 29 March 2017, 18:48:43 UTC | ntcard.cpp: set --cov to 65535 | 29 March 2017, 18:48:43 UTC |
| a3cc209 | Hamid Mohamadi | 26 February 2017, 19:16:02 UTC | Update README: specify prefix for output file | 26 February 2017, 19:16:02 UTC |
| a361732 | mohamadi | 26 February 2017, 19:06:06 UTC | Added feature: specify prefix for output histogram files | 26 February 2017, 19:06:06 UTC |
| 15ce07e | Hamid Mohamadi | 02 February 2017, 22:39:42 UTC | Update configure.ac | 02 February 2017, 22:39:42 UTC |
| c7e9f88 | mohamadi | 02 February 2017, 19:21:58 UTC | Make -O3 defualt in configure.ac | 02 February 2017, 19:21:58 UTC |
| 73c2f3a | mohamadi | 31 January 2017, 22:43:28 UTC | Added inline to all functions | 31 January 2017, 22:43:28 UTC |
| 3d1b07b | mohamadi | 19 January 2017, 01:05:25 UTC | Makefile.am: included StringUtil.h | 19 January 2017, 01:05:25 UTC |
| dd1b886 | Hamid Mohamadi | 11 January 2017, 22:17:17 UTC | Update README.md | 11 January 2017, 22:17:17 UTC |
| de4252d | Hamid Mohamadi | 11 January 2017, 21:01:42 UTC | Update README.md | 11 January 2017, 21:01:42 UTC |
| 86d28c1 | Hamid Mohamadi | 11 January 2017, 20:56:14 UTC | Update README.md | 11 January 2017, 20:56:14 UTC |
| 88f0622 | mohamadi | 11 January 2017, 20:49:53 UTC | Autotools version | 11 January 2017, 20:49:53 UTC |
| 7eda6f8 | Hamid Mohamadi | 08 January 2017, 19:16:36 UTC | Update README.md | 08 January 2017, 19:16:36 UTC |
| 9a328dc | Hamid Mohamadi | 22 December 2016, 20:40:56 UTC | Update README.md | 22 December 2016, 20:40:56 UTC |
| 38d21c1 | mohamadi | 22 December 2016, 20:32:26 UTC | made code C++14 friendly | 22 December 2016, 20:32:26 UTC |
| 8be737f | mohamadi | 22 December 2016, 20:20:30 UTC | Added multiple k option | 22 December 2016, 20:20:30 UTC |
| 1789808 | Hamid Mohamadi | 06 December 2016, 20:45:38 UTC | Update README.md | 06 December 2016, 20:45:38 UTC |
| 189c34c | Hamid Mohamadi | 06 December 2016, 20:22:17 UTC | Update README.md | 06 December 2016, 20:22:17 UTC |
| 83319cd | mohamadi | 04 November 2016, 23:29:45 UTC | Added COPYRIGHT | 04 November 2016, 23:29:45 UTC |
| 2ff88f3 | Hamid Mohamadi | 04 November 2016, 17:10:37 UTC | Update LICENSE | 04 November 2016, 17:10:37 UTC |
| 1057d5e | Hamid Mohamadi | 03 November 2016, 21:21:14 UTC | Delete COPYRIGHT | 03 November 2016, 21:21:14 UTC |
| feb151e | Hamid Mohamadi | 03 November 2016, 20:52:23 UTC | Update README.md | 03 November 2016, 20:52:23 UTC |
| d6a5b67 | Hamid Mohamadi | 03 November 2016, 18:59:36 UTC | Update LICENSE | 03 November 2016, 18:59:36 UTC |
| 30b0cbc | Hamid Mohamadi | 03 November 2016, 18:14:11 UTC | Update LICENSE | 03 November 2016, 18:14:11 UTC |
| 14cf1e8 | Hamid Mohamadi | 03 November 2016, 18:12:53 UTC | Update LICENSE | 03 November 2016, 18:12:53 UTC |
| f37ff6d | Hamid Mohamadi | 03 November 2016, 17:42:54 UTC | Update LICENSE | 03 November 2016, 17:42:54 UTC |
| 0931eda | Hamid Mohamadi | 31 October 2016, 23:19:47 UTC | Update README.md | 31 October 2016, 23:19:47 UTC |
| cd43ba8 | Hamid Mohamadi | 31 October 2016, 23:18:18 UTC | Update README.md | 31 October 2016, 23:18:18 UTC |
| 434dcb7 | Hamid Mohamadi | 31 October 2016, 20:40:58 UTC | Update README.md | 31 October 2016, 20:40:58 UTC |
| 76cef0a | Hamid Mohamadi | 31 October 2016, 20:31:41 UTC | Update README.md | 31 October 2016, 20:31:41 UTC |
| 53d67d7 | Hamid Mohamadi | 31 October 2016, 20:27:08 UTC | Update README.md | 31 October 2016, 20:27:08 UTC |
| 5cfb4bc | mohamadi | 31 October 2016, 20:13:01 UTC | Adding GPL-3 License | 31 October 2016, 20:13:01 UTC |
| 65a2cd7 | mohamadi | 31 October 2016, 20:03:02 UTC | Submitted version | 31 October 2016, 20:03:02 UTC |
| 9c199bd | mohamadi | 20 July 2016, 17:55:50 UTC | nthash handles k-mers with nonACGT | 20 July 2016, 17:55:50 UTC |
| 97dc3b2 | mohamadi | 19 July 2016, 17:52:26 UTC | nthist: accepting bam, sam, gz, bz, fasta, fastq format | 19 July 2016, 17:52:26 UTC |
| 5409a93 | mohamadi | 16 July 2016, 19:12:44 UTC | nonACGT resolved | 16 July 2016, 19:12:44 UTC |
| ce1b6ee | mohamadi | 09 July 2016, 17:58:29 UTC | nthist first version | 09 July 2016, 17:58:29 UTC |
| 34a6dd0 | mohamadi | 21 June 2016, 00:35:26 UTC | Makefile:added ntcardm | 21 June 2016, 00:35:26 UTC |
| 2257e55 | mohamadi | 21 June 2016, 00:10:17 UTC | ntcardm.cpp: multi k-value ntcard added | 21 June 2016, 00:10:17 UTC |
| bcd0f86 | mohamadi | 20 June 2016, 16:38:32 UTC | estComp added | 20 June 2016, 16:38:32 UTC |
| 6569665 | mohamadi | 20 June 2016, 16:08:55 UTC | ntcard.cpp: formatted | 20 June 2016, 16:08:55 UTC |
| 6d9fc33 | mohamadi | 20 June 2016, 16:06:33 UTC | ntcard.cpp: f1 computation added | 20 June 2016, 16:06:33 UTC |
| fa9c5c1 | mohamadi | 17 June 2016, 21:29:46 UTC | Merge branch 'master' of github.com:bcgsc/ntCard | 17 June 2016, 21:29:46 UTC |
| 9074963 | mohamadi | 16 June 2016, 21:45:45 UTC | First Parallel Version: Data Parallelism | 16 June 2016, 21:45:45 UTC |
| 72ba3bf | Golnaz Jahesh | 16 June 2016, 02:44:13 UTC | Revert "Kmer count comparison of kmc-abyss" This reverts commit 53f1a9d5713d36a1463e2a3bcc26915ec6777ab1. | 16 June 2016, 02:44:13 UTC |
| 53f1a9d | Golnaz Jahesh | 16 June 2016, 02:33:37 UTC | Kmer count comparison of kmc-abyss | 16 June 2016, 02:33:37 UTC |
| 8272d1e | mohamadi | 08 June 2016, 01:48:25 UTC | Checking seqLen>= kmerLen | 08 June 2016, 01:48:25 UTC |
| a4049ad | mohamadi | 08 June 2016, 01:15:07 UTC | formatted ntcard.cpp | 08 June 2016, 01:15:07 UTC |
| e1c6b46 | mohamadi | 08 June 2016, 01:13:39 UTC | reading BAM and gzip files | 08 June 2016, 01:13:39 UTC |
| 0c918c6 | mohamadi | 07 June 2016, 18:21:37 UTC | FastaReader added | 07 June 2016, 18:21:37 UTC |
| ce5fa36 | Hamid Mohamadi | 03 June 2016, 22:31:35 UTC | Update ntcard.cpp | 03 June 2016, 22:31:35 UTC |
| 44360a0 | Hamid Mohamadi | 03 June 2016, 22:20:24 UTC | Update ntcard.cpp | 03 June 2016, 22:20:24 UTC |
| f90e292 | Hamid Mohamadi | 03 June 2016, 22:20:07 UTC | Update ntcard.cpp | 03 June 2016, 22:20:07 UTC |
| f97b25e | mohamadi | 03 June 2016, 22:17:51 UTC | Reading from fasta file, gz file, and estimating canonical form added | 03 June 2016, 22:17:51 UTC |
| 37d1c3c | mohamadi | 03 June 2016, 19:08:03 UTC | Multiple file option added | 03 June 2016, 19:08:03 UTC |
| 1f31930 | mohamadi | 03 June 2016, 18:57:03 UTC | Initial parallel version | 03 June 2016, 18:57:03 UTC |
| 2241563 | mohamadi | 02 June 2016, 23:35:38 UTC | Parameter tuning | 02 June 2016, 23:35:38 UTC |
| cf5dbd9 | mohamadi | 02 June 2016, 23:31:47 UTC | Parameter tuning | 02 June 2016, 23:31:47 UTC |
| 37db140 | mohamadi | 02 June 2016, 16:05:59 UTC | bfcard added | 02 June 2016, 16:05:59 UTC |
| 52cd119 | mohamadi | 02 June 2016, 16:05:24 UTC | ntcard first working version | 02 June 2016, 16:05:24 UTC |
