swh:1:snp:a0c50030ca57fc477cf863f130d89b83459157c3
Tip revision: c1069ff942f364c8bbda771405176d5f6173b3c8 authored by vobencha on 30 October 2018, 15:54:39 UTC
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
Tip revision: c1069ff
README.md
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This project contains several tools for gene expression analysis with help of R/Bioconductor`
## Installation
The package requires installing `devtools` package and Bioconductor library set up.
```{r}
devtools::install_github("ctlab/phantasus")
```
A warning could appear that the repository contain submodules. This warning
can be safely ignored.
## Running
In R:
```{r}
library(phantasus)
servePhantasus('0.0.0.0', 8000, cacheDir='cache')
```
Open `http://localhost:8000` in your browser.
## System dependencies
There are several system packages that have to be installed on the system. The
names of these packages will be displayed during installation. On Ubuntu can
install them beforehand and all together using command:
```{bash}
sudo apt-get install libapparmor-dev libprotobuf-dev protobuf-compiler libcurl4-openssl-dev libssl-dev libxml2-dev
```
## Docker
To simplify deployment phantasus Docker image can be used. It is build regularly and is available at https://hub.docker.com/r/dzenkova/phantasus
and can be run with the following commands:
```{bash}
docker pull dzenkova/phantasus
docker run -t -d -p 80:80 dzenkova/phantasus
```