| a2c98dd | Andrew Butler | 28 September 2020, 22:23:08 UTC | Merge pull request #426 from satijalab/fix/mixscape_checkfixes [WIP] Miscellaneous fixes for mixscape | 28 September 2020, 22:23:08 UTC |
| e4692b4 | Andrew | 28 September 2020, 22:18:20 UTC | fix warnings/notes | 28 September 2020, 22:18:20 UTC |
| 40706c6 | Andrew | 28 September 2020, 21:57:20 UTC | Merge branch 'mixscape' into fix/mixscape_checkfixes | 28 September 2020, 21:57:20 UTC |
| 2d7f8e2 | Efthymia Papalexi | 28 September 2020, 21:54:41 UTC | minor documentation fixes | 28 September 2020, 21:54:41 UTC |
| 63e2e85 | Andrew Butler | 28 September 2020, 19:54:30 UTC | Merge branch 'develop' into fix/miscape_checkfixes | 28 September 2020, 19:54:30 UTC |
| 4d6a0d0 | Paul Hoffman | 28 September 2020, 17:08:59 UTC | Merge pull request #425 from satijalab/fix/identity Replace 'Same' with 'base::identity' | 28 September 2020, 17:08:59 UTC |
| 33d3504 | Paul Hoffman | 28 September 2020, 17:04:23 UTC | Bump develop version Update changelog | 28 September 2020, 17:04:23 UTC |
| b1f8dbc | Paul Hoffman | 28 September 2020, 16:50:51 UTC | Merge branch 'develop' into fix/identity | 28 September 2020, 16:50:51 UTC |
| fe93b05 | Paul Hoffman | 28 September 2020, 16:44:04 UTC | Merge pull request #3548 from satijalab/develop Seurat v3.2.2 | 28 September 2020, 16:44:04 UTC |
| e528a88 | Paul Hoffman | 25 September 2020, 20:51:12 UTC | Merge branch 'develop' into fix/identity | 25 September 2020, 20:51:12 UTC |
| e8ab90c | Efthymia Papalexi | 25 September 2020, 20:51:01 UTC | documentation fixes | 25 September 2020, 20:51:01 UTC |
| 7c7423d | Paul Hoffman | 25 September 2020, 18:20:23 UTC | Merge pull request #419 from satijalab/release/3.2.2 Prep for CRAN release of 3.2.2 | 25 September 2020, 18:20:23 UTC |
| 1b3967a | Paul Hoffman | 23 September 2020, 19:27:14 UTC | Update CRAN comments | 23 September 2020, 19:27:14 UTC |
| 056c750 | Andrew | 23 September 2020, 18:00:31 UTC | update DESCRIPTION/NEWS | 23 September 2020, 18:00:31 UTC |
| f47c6c3 | Andrew | 23 September 2020, 17:58:44 UTC | Merge branch 'develop' into release/3.2.2 | 23 September 2020, 17:58:44 UTC |
| 0f59a40 | Andrew Butler | 23 September 2020, 13:08:11 UTC | Merge pull request #421 from satijalab/fix/sctransform_0.3 vst parameter name change | 23 September 2020, 13:08:11 UTC |
| 6976c7d | Andrew Butler | 22 September 2020, 13:29:32 UTC | updates to sct verbosity parameter | 22 September 2020, 13:29:32 UTC |
| 1ec264d | Andrew Butler | 22 September 2020, 02:44:11 UTC | Merge branch 'develop' into fix/sctransform_0.3 | 22 September 2020, 02:44:11 UTC |
| a85ed28 | Andrew | 22 September 2020, 02:42:32 UTC | vst parameter name change | 22 September 2020, 02:42:32 UTC |
| beccf8f | Paul Hoffman | 21 September 2020, 17:42:22 UTC | Update NEWS | 21 September 2020, 17:42:22 UTC |
| d65974a | Paul Hoffman | 21 September 2020, 17:41:45 UTC | Update README | 21 September 2020, 17:41:45 UTC |
| 813580a | Paul Hoffman | 21 September 2020, 17:37:49 UTC | Update DESCRIPTION | 21 September 2020, 17:37:49 UTC |
| 1eab1f4 | Andrew Butler | 21 September 2020, 15:45:10 UTC | Merge pull request #418 from satijalab/fix/sctransform_0.3 fixes for updated v0.3 sctransform | 21 September 2020, 15:45:10 UTC |
| ec4d94e | Andrew | 21 September 2020, 15:40:34 UTC | bump develop version, update NEWS | 21 September 2020, 15:40:34 UTC |
| 815834f | Andrew | 21 September 2020, 13:19:48 UTC | fixes for updated v0.3 sctransform | 21 September 2020, 13:19:48 UTC |
| b7e7ffe | Andrew Butler | 18 September 2020, 20:27:18 UTC | Merge pull request #414 from satijalab/fix/futureAnnoy fix annoy search with non-multicore future plans | 18 September 2020, 20:27:18 UTC |
| ad59e2a | Andrew | 18 September 2020, 20:22:12 UTC | bump develop version, update NEWS | 18 September 2020, 20:22:12 UTC |
| 1392158 | Andrew | 18 September 2020, 19:54:26 UTC | fix annoy search with non-multicore future plans | 18 September 2020, 19:54:26 UTC |
| 02145bc | Andrew Butler | 17 September 2020, 17:55:33 UTC | Merge pull request #412 from satijalab/fix/dimnamecheck Convert to matrix before dimname checks in CreateAssayObject | 17 September 2020, 17:55:33 UTC |
| afee30e | Andrew | 17 September 2020, 17:49:19 UTC | bump develop version, update NEWS | 17 September 2020, 17:49:19 UTC |
| d853ee7 | timoast | 17 September 2020, 14:35:47 UTC | Convert to matrix before dimname checks; #3435 | 17 September 2020, 14:35:47 UTC |
| afa9c2e | Paul Hoffman | 16 September 2020, 17:53:23 UTC | Merge pull request #411 from satijalab/feat/Rproj Utilize RStudio Projects for consistent auto-formatting of source code | 16 September 2020, 17:53:23 UTC |
| 8501c6c | Paul Hoffman | 16 September 2020, 15:35:06 UTC | Update docs | 16 September 2020, 15:35:06 UTC |
| 085ad47 | Paul Hoffman | 16 September 2020, 15:34:45 UTC | Update source R files with Rproj-enforced formatting | 16 September 2020, 15:34:45 UTC |
| 4e358e7 | Paul Hoffman | 16 September 2020, 15:34:02 UTC | Add the Rproj file | 16 September 2020, 15:34:02 UTC |
| 3d29380 | Paul Hoffman | 11 September 2020, 21:53:19 UTC | Merge pull request #409 from satijalab/fix/subset_features retain Graph and Neighbor objects when only subsetting features | 11 September 2020, 21:53:19 UTC |
| e42a605 | Paul Hoffman | 11 September 2020, 21:44:30 UTC | Update changelog Bump develop version | 11 September 2020, 21:44:30 UTC |
| 09dc5fe | Andrew Butler | 11 September 2020, 20:58:50 UTC | Update R/objects.R Co-authored-by: Paul Hoffman <mojaveazure@users.noreply.github.com> | 11 September 2020, 20:58:50 UTC |
| 5bd99f6 | Andrew | 11 September 2020, 20:51:24 UTC | retain Graph and Neighbor objects when only subsetting features | 11 September 2020, 20:51:24 UTC |
| 361e60a | Paul Hoffman | 11 September 2020, 20:49:36 UTC | Merge pull request #408 from satijalab/fix/WhichCellsSeed Set seed regardless of 'idents' | 11 September 2020, 20:49:36 UTC |
| 2322060 | Paul Hoffman | 11 September 2020, 20:41:46 UTC | Bump develop version | 11 September 2020, 20:41:46 UTC |
| 256fd16 | Paul Hoffman | 11 September 2020, 20:41:25 UTC | Update NEWS | 11 September 2020, 20:41:25 UTC |
| ec84045 | Paul Hoffman | 11 September 2020, 20:31:37 UTC | Update tests to fix failing subset somewhere | 11 September 2020, 20:31:37 UTC |
| 1e2c90c | Paul Hoffman | 11 September 2020, 19:00:11 UTC | Set seed regardless of 'idents' | 11 September 2020, 19:00:11 UTC |
| eba9474 | Paul Hoffman | 09 September 2020, 18:41:31 UTC | Merge pull request #406 from satijalab/fix/AddModuleScoreTypo Fix typo in docs for AddModuleScore | 09 September 2020, 18:41:31 UTC |
| 0b0d874 | Paul Hoffman | 09 September 2020, 18:15:06 UTC | Fix typo in docs for AddModuleScore addresses satijalab/seurat#3488 | 09 September 2020, 18:15:06 UTC |
| edd6a62 | Paul Hoffman | 09 September 2020, 18:11:45 UTC | Merge branch 'master' into develop | 09 September 2020, 18:11:45 UTC |
| c23845d | satijalab | 07 September 2020, 16:55:08 UTC | Merge pull request #3479 from satijalab/develop Seurat v3.2.1 | 07 September 2020, 16:55:08 UTC |
| 3b24be1 | Andrew Butler | 07 September 2020, 15:43:38 UTC | Merge pull request #402 from satijalab/issue_templates Issue templates | 07 September 2020, 15:43:38 UTC |
| 6e43f99 | Andrew Butler | 07 September 2020, 15:37:59 UTC | Merge branch 'develop' into issue_templates | 07 September 2020, 15:37:59 UTC |
| 359c15d | timoast | 07 September 2020, 15:35:12 UTC | Change default title | 07 September 2020, 15:35:12 UTC |
| 86d33bf | Paul Hoffman | 04 September 2020, 22:51:37 UTC | Update URLs | 04 September 2020, 22:51:37 UTC |
| 5d0fddb | Saket Choudhary | 04 September 2020, 22:28:48 UTC | Fix typo, suggest SeuratData Co-authored-by: Andrew Butler <andrewwbutler@users.noreply.github.com> | 04 September 2020, 22:28:48 UTC |
| 46aee10 | Saket Choudhary | 04 September 2020, 22:00:00 UTC | Merge branch 'develop' into issue_templates | 04 September 2020, 22:00:00 UTC |
| 1fe07dc | Saket Choudhary | 04 September 2020, 20:45:33 UTC | Fix documentation template | 04 September 2020, 20:45:33 UTC |
| 99c5318 | Saket Choudhary | 04 September 2020, 20:43:07 UTC | Add issue templates | 04 September 2020, 20:43:07 UTC |
| 932f426 | Paul Hoffman | 04 September 2020, 20:30:01 UTC | Merge pull request #387 from satijalab/release/3.2.1 Prep for CRAN release of 3.2.1 | 04 September 2020, 20:30:01 UTC |
| 31de785 | Paul Hoffman | 04 September 2020, 20:21:26 UTC | Merge branch 'develop' into release/3.2.1 | 04 September 2020, 20:21:26 UTC |
| 5869ef4 | Paul Hoffman | 04 September 2020, 20:18:40 UTC | Merge pull request #401 from satijalab/fix/FindNeighborsDocs Update documentation for FindNeighbors | 04 September 2020, 20:18:40 UTC |
| 36b533c | Paul Hoffman | 04 September 2020, 20:05:10 UTC | Merge branch 'develop' into fix/FindNeighborsDocs | 04 September 2020, 20:05:10 UTC |
| c2f5ae1 | Paul Hoffman | 04 September 2020, 20:04:01 UTC | Update README.md | 04 September 2020, 20:04:01 UTC |
| c680e35 | Paul Hoffman | 04 September 2020, 20:03:02 UTC | Update CRAN comments | 04 September 2020, 20:03:02 UTC |
| 86a817a | Paul Hoffman | 04 September 2020, 19:54:55 UTC | Merge branch 'release/3.2.1' of github.com:satijalab/seurat-private into release/3.2.1 | 04 September 2020, 19:54:55 UTC |
| 69d326a | Paul Hoffman | 04 September 2020, 19:54:52 UTC | devtools::document updated these | 04 September 2020, 19:54:52 UTC |
| 9e62358 | Paul Hoffman | 04 September 2020, 19:54:04 UTC | Update URLs for CRAN | 04 September 2020, 19:54:04 UTC |
| 1833f95 | Paul Hoffman | 04 September 2020, 19:43:08 UTC | Merge branch 'develop' into release/3.2.1 | 04 September 2020, 19:43:08 UTC |
| 47d8f56 | Paul Hoffman | 04 September 2020, 19:42:47 UTC | Merge pull request #357 from satijalab/feat/MoreViolins Stacked violin plot | 04 September 2020, 19:42:47 UTC |
| 89459b8 | Paul Hoffman | 04 September 2020, 19:38:25 UTC | Update changelog | 04 September 2020, 19:38:25 UTC |
| 682180f | Paul Hoffman | 04 September 2020, 19:23:38 UTC | Merge branch 'develop' into feat/MoreViolins | 04 September 2020, 19:23:38 UTC |
| b57a149 | Paul Hoffman | 04 September 2020, 19:05:07 UTC | Merge branch 'develop' into release/3.2.1 | 04 September 2020, 19:05:07 UTC |
| dc68faf | Paul Hoffman | 04 September 2020, 19:04:37 UTC | Merge pull request #399 from satijalab/fix/VizDimLoadingsCols fix ncol parameter in VizDimLoadings | 04 September 2020, 19:04:37 UTC |
| cd8a9a5 | Paul Hoffman | 04 September 2020, 19:00:38 UTC | Update documentation for FindNeighbors Clarifies uses of assay and features parameters in FindNeighbors fixes satijalab/seurat#3449 | 04 September 2020, 19:00:38 UTC |
| 37f3e5e | Andrew | 04 September 2020, 18:57:21 UTC | merge | 04 September 2020, 18:57:21 UTC |
| f491970 | Andrew | 04 September 2020, 18:56:39 UTC | dims not features | 04 September 2020, 18:56:39 UTC |
| 3469d5e | Paul Hoffman | 04 September 2020, 18:53:35 UTC | Fix issue where 'features' was being used prior to definition | 04 September 2020, 18:53:35 UTC |
| d9ec1ee | Andrew | 04 September 2020, 18:42:31 UTC | fix ncol parameter in VizDimLoadings | 04 September 2020, 18:42:31 UTC |
| 401982e | Paul Hoffman | 04 September 2020, 18:32:21 UTC | Bump minimum R version | 04 September 2020, 18:32:21 UTC |
| 18e876e | Efthymia Papalexi | 04 September 2020, 13:53:16 UTC | Merge branch 'mixscape' of github.com:satijalab/seurat-private into mixscape | 04 September 2020, 13:53:16 UTC |
| cd4d317 | Efthymia Papalexi | 04 September 2020, 13:52:15 UTC | fixes | 04 September 2020, 13:52:15 UTC |
| 076861a | Paul Hoffman | 03 September 2020, 19:56:24 UTC | Merge branch 'develop' into release/3.2.1 | 03 September 2020, 19:56:24 UTC |
| 6d05790 | Paul Hoffman | 03 September 2020, 19:55:30 UTC | Merge pull request #396 from satijalab/fix/SpatialLabels Fixes spatial labeling | 03 September 2020, 19:55:30 UTC |
| 89023ca | Paul Hoffman | 03 September 2020, 19:48:40 UTC | Bump develop version | 03 September 2020, 19:48:40 UTC |
| 17caa21 | Paul Hoffman | 03 September 2020, 19:48:20 UTC | Merge branch 'fix/SpatialLabels' of github.com:satijalab/seurat-private into fix/SpatialLabels | 03 September 2020, 19:48:20 UTC |
| 38bbead | Paul Hoffman | 03 September 2020, 19:48:13 UTC | Update NEWS | 03 September 2020, 19:48:13 UTC |
| 653315e | Paul Hoffman | 03 September 2020, 19:47:18 UTC | Merge branch 'develop' into fix/SpatialLabels | 03 September 2020, 19:47:18 UTC |
| e332474 | Andrew Butler | 03 September 2020, 15:47:52 UTC | Merge branch 'develop' into release/3.2.1 | 03 September 2020, 15:47:52 UTC |
| 5eb6938 | Andrew Butler | 03 September 2020, 15:47:29 UTC | Merge pull request #398 from satijalab/fix/IndicesLoop move Indices calls outside loops | 03 September 2020, 15:47:29 UTC |
| 95d2e51 | cdarby | 03 September 2020, 14:50:29 UTC | move Indices calls outside loops | 03 September 2020, 14:50:29 UTC |
| f787a70 | Andrew | 03 September 2020, 05:53:27 UTC | updating spatial labeling code, require ggplot2>=3.3.0 | 03 September 2020, 05:53:27 UTC |
| 460789c | Paul Hoffman | 03 September 2020, 01:28:14 UTC | Merge branch 'develop' into release/3.2.1 | 03 September 2020, 01:28:14 UTC |
| 8fa092d | Paul Hoffman | 03 September 2020, 01:27:45 UTC | Merge pull request #395 from satijalab/feat/SuggestApe Move ape to suggests | 03 September 2020, 01:27:45 UTC |
| b87d0a1 | Paul Hoffman | 02 September 2020, 21:17:01 UTC | Merge branch 'develop' into feat/SuggestApe | 02 September 2020, 21:17:01 UTC |
| 6e0b659 | Paul Hoffman | 02 September 2020, 21:16:52 UTC | Update R/tree.R Co-authored-by: Andrew Butler <andrewwbutler@users.noreply.github.com> | 02 September 2020, 21:16:52 UTC |
| 589fba0 | Paul Hoffman | 02 September 2020, 21:10:36 UTC | Merge pull request #394 from satijalab/feat/deprecate_cellbrowser Deprecate cell browser functionality | 02 September 2020, 21:10:36 UTC |
| 9d44e76 | Paul Hoffman | 02 September 2020, 21:05:40 UTC | Merge branch 'develop' into release/3.2.1 | 02 September 2020, 21:05:40 UTC |
| 8c74801 | Paul Hoffman | 02 September 2020, 20:56:20 UTC | Merge branch 'develop' into feat/deprecate_cellbrowser | 02 September 2020, 20:56:20 UTC |
| d599798 | Paul Hoffman | 02 September 2020, 20:55:48 UTC | Merge pull request #393 from satijalab/feat/deprecate_disk Deprecate H5AD and loom functions in favor of SeuratDisk implementations | 02 September 2020, 20:55:48 UTC |
| 971af48 | Paul Hoffman | 02 September 2020, 20:53:50 UTC | Move ape to suggests Cluster tree functionality and Moran's I now search for ape Should help reduce install times while keeping desired functionality for those that want it | 02 September 2020, 20:53:50 UTC |
| 6d57ca7 | Paul Hoffman | 02 September 2020, 20:24:51 UTC | Deprecate cell browser functionality | 02 September 2020, 20:24:51 UTC |
| 8a2ffcf | Paul Hoffman | 02 September 2020, 20:20:36 UTC | Merge branch 'develop' into feat/deprecate_disk | 02 September 2020, 20:20:36 UTC |
