| 49a1be0 | satijalab | 13 December 2019, 20:42:25 UTC | Merge pull request #2416 from satijalab/develop Seurat v3.1.2 | 13 December 2019, 20:42:25 UTC |
| 9f57968 | satijalab | 12 December 2019, 21:13:56 UTC | Merge pull request #234 from satijalab/release/3.1.2 Prep for CRAN release of 3.1.2 | 12 December 2019, 21:13:56 UTC |
| 04ebc61 | Paul Hoffman | 12 December 2019, 21:06:57 UTC | Update cran-comments | 12 December 2019, 21:06:57 UTC |
| 933eca0 | Paul Hoffman | 12 December 2019, 17:30:38 UTC | Require UWOT v0.1.5 or higher See satijalab/seurat#2256 for more details | 12 December 2019, 17:30:38 UTC |
| 10eca22 | Andrew Butler | 12 December 2019, 14:37:47 UTC | fix CellCycleScoring to work with new names fix | 12 December 2019, 14:37:47 UTC |
| ce52f9c | Paul Hoffman | 11 December 2019, 21:47:42 UTC | Add biocViews to DESCRIPTION to facilitate installation of bioc dependencies | 11 December 2019, 21:47:42 UTC |
| 400266a | Paul Hoffman | 11 December 2019, 20:10:30 UTC | Update documentation | 11 December 2019, 20:10:30 UTC |
| 0933b42 | Andrew Butler | 11 December 2019, 19:37:52 UTC | Merge branch 'develop' into release/3.1.2 | 11 December 2019, 19:37:52 UTC |
| bab5af8 | Andrew Butler | 11 December 2019, 19:37:05 UTC | Merge pull request #224 from satijalab/fix/assignment Add checks for object name assignment | 11 December 2019, 19:37:05 UTC |
| bb3fc9f | Andrew Butler | 11 December 2019, 19:30:18 UTC | bump develop version | 11 December 2019, 19:30:18 UTC |
| ae699eb | Paul Hoffman | 10 December 2019, 19:51:46 UTC | Add RenameAssays | 10 December 2019, 19:51:46 UTC |
| 1448774 | Paul Hoffman | 10 December 2019, 16:30:57 UTC | Handle(ish) multiple objects being added at once | 10 December 2019, 16:30:57 UTC |
| 328f5c3 | Paul Hoffman | 10 December 2019, 16:28:39 UTC | Only run make.names when value != NULL | 10 December 2019, 16:28:39 UTC |
| 51c4fae | Paul Hoffman | 10 December 2019, 16:02:08 UTC | Merge branch 'develop' into fix/assignment | 10 December 2019, 16:02:08 UTC |
| 1c9f06a | Paul Hoffman | 10 December 2019, 15:57:44 UTC | Merge branch 'develop' into release/3.1.2 | 10 December 2019, 15:57:44 UTC |
| de47632 | Paul Hoffman | 10 December 2019, 15:57:22 UTC | Merge pull request #237 from satijalab/docs/runpca Update docs for RunPCA | 10 December 2019, 15:57:22 UTC |
| 166ce1c | timoast | 09 December 2019, 15:42:53 UTC | Fix typo | 09 December 2019, 15:42:53 UTC |
| be5e5c1 | Andrew Butler | 09 December 2019, 15:31:49 UTC | Merge branch 'develop' into fix/assignment | 09 December 2019, 15:31:49 UTC |
| 082409e | Andrew Butler | 09 December 2019, 15:30:14 UTC | Merge branch 'develop' into release/3.1.2 | 09 December 2019, 15:30:14 UTC |
| beafbca | timoast | 09 December 2019, 14:59:18 UTC | Update docs for RunPCA | 09 December 2019, 14:59:18 UTC |
| f1c60e9 | Paul Hoffman | 06 December 2019, 17:03:59 UTC | Merge pull request #236 from satijalab/feat/rowmergemat Export RowMergeSparseMatrices | 06 December 2019, 17:03:59 UTC |
| 038d548 | Paul Hoffman | 06 December 2019, 16:51:31 UTC | Fix code sorting | 06 December 2019, 16:51:31 UTC |
| 5b2a1ab | timoast | 06 December 2019, 16:11:58 UTC | Export RowMergeSparseMatrices | 06 December 2019, 16:11:58 UTC |
| a8ad38a | Paul Hoffman | 05 December 2019, 19:46:38 UTC | Merge pull request #235 from satijalab/feat/CellsByIdentities Export CellsByIdentities | 05 December 2019, 19:46:38 UTC |
| 7206c1d | Paul Hoffman | 05 December 2019, 19:28:13 UTC | Export CellsByIdentities Also add new idents parameter to limit resulting vector | 05 December 2019, 19:30:02 UTC |
| a195b22 | Paul Hoffman | 05 December 2019, 17:41:03 UTC | Update README version | 05 December 2019, 17:41:03 UTC |
| 9b1cbd8 | Paul Hoffman | 05 December 2019, 17:40:14 UTC | Update NEWS with additions/changes for v3.1.2 | 05 December 2019, 17:40:14 UTC |
| d2a26b9 | Paul Hoffman | 05 December 2019, 16:51:12 UTC | Merge branch 'develop' into fix/assignment | 05 December 2019, 16:51:12 UTC |
| 26e0796 | Andrew Butler | 05 December 2019, 14:51:56 UTC | update docs for patch release - new roxygen2 version | 05 December 2019, 14:51:56 UTC |
| bc0ce65 | Paul Hoffman | 04 December 2019, 19:51:21 UTC | Merge pull request #233 from satijalab/fix/inherits Change object class testing to use inherits or is.* instead of class | 04 December 2019, 19:51:21 UTC |
| 2c5c05f | Paul Hoffman | 04 December 2019, 19:37:17 UTC | Bump develop version | 04 December 2019, 19:37:17 UTC |
| 08c1ab1 | Andrew Butler | 04 December 2019, 19:17:18 UTC | trigger rebuild | 04 December 2019, 19:17:18 UTC |
| 288686a | Paul Hoffman | 04 December 2019, 16:51:02 UTC | Change object class testing to use inherits or is.* instead of class In R 4.X, matrices are now arrays This means that class(matrix()) will be a two-length vector instead of one-length if doesn't like two-length vectors, so using class becomes dangerous Instead, we're using inherits or is.* functions to test object class | 04 December 2019, 16:51:02 UTC |
| fc92826 | Andrew Butler | 27 November 2019, 17:34:34 UTC | Merge pull request #232 from satijalab/fix/scaledatadocs Fix docs for ScaleData | 27 November 2019, 17:34:34 UTC |
| e79ce45 | Andrew Butler | 27 November 2019, 17:29:07 UTC | run docs, bump develop version | 27 November 2019, 17:29:07 UTC |
| 4ed00c4 | timoast | 27 November 2019, 15:44:42 UTC | Fix docs for ScaleData | 27 November 2019, 15:44:42 UTC |
| 21f877c | Andrew Butler | 19 November 2019, 23:34:50 UTC | Merge pull request #231 from satijalab/fix/PercentageFeatureSet make sure proper assay is being used | 19 November 2019, 23:34:50 UTC |
| dea922c | Andrew Butler | 19 November 2019, 23:26:26 UTC | bump develop version | 19 November 2019, 23:26:26 UTC |
| 29a9290 | Andrew Butler | 19 November 2019, 23:19:28 UTC | make sure proper assay is being used | 19 November 2019, 23:19:28 UTC |
| 991061e | Paul Hoffman | 15 November 2019, 18:02:38 UTC | Add reference to make.names | 15 November 2019, 18:02:38 UTC |
| 39f94d4 | Paul Hoffman | 15 November 2019, 17:52:04 UTC | Merge branch 'develop' into fix/assignment | 15 November 2019, 17:52:04 UTC |
| 77db40a | Paul Hoffman | 15 November 2019, 17:51:17 UTC | Merge pull request #229 from satijalab/fix/setassaydata Pass dots to SetAssayData.Assay | 15 November 2019, 17:51:17 UTC |
| 3b74463 | Paul Hoffman | 15 November 2019, 17:43:24 UTC | Bump develop version | 15 November 2019, 17:43:24 UTC |
| f180ad4 | Paul Hoffman | 15 November 2019, 17:42:10 UTC | Merge branch 'develop' into fix/setassaydata | 15 November 2019, 17:42:10 UTC |
| 7790ef3 | Paul Hoffman | 15 November 2019, 17:41:49 UTC | Merge pull request #230 from satijalab/fix/UpdateDocs improve RunPCA docs, update .Rd files for seed changes | 15 November 2019, 17:41:49 UTC |
| 8778522 | Paul Hoffman | 15 November 2019, 17:36:10 UTC | Bump develop version | 15 November 2019, 17:36:10 UTC |
| 4665a0e | Paul Hoffman | 15 November 2019, 17:35:58 UTC | Merge branch 'develop' into fix/UpdateDocs | 15 November 2019, 17:35:58 UTC |
| eaddb08 | Andrew Butler | 15 November 2019, 17:25:41 UTC | Merge pull request #2182 from Yue-Jiang/master bug fix for RunTSNE when supplying features directly | 15 November 2019, 17:25:41 UTC |
| 550af42 | Andrew Butler | 15 November 2019, 16:43:45 UTC | minor style fix, bump develop version | 15 November 2019, 16:43:45 UTC |
| 22e90c9 | Andrew Butler | 15 November 2019, 16:43:05 UTC | Merge branch 'develop' of github.com:satijalab/seurat | 15 November 2019, 16:43:05 UTC |
| a1baa66 | Andrew Butler | 15 November 2019, 16:10:28 UTC | Merge branch 'develop' into fix/UpdateDocs | 15 November 2019, 16:10:28 UTC |
| daa330f | Andrew Butler | 15 November 2019, 16:09:33 UTC | Merge pull request #228 from satijalab/fix/ExtraDocs remove roxygen docs for non-exported functions, move to internal section of file | 15 November 2019, 16:09:33 UTC |
| fd5ce0c | Andrew Butler | 15 November 2019, 16:08:23 UTC | improve RunPCA docs, update .Rd files for seed changes | 15 November 2019, 16:08:23 UTC |
| 6e4ec8a | timoast | 14 November 2019, 19:26:43 UTC | Pass dots to SetAssayData.Assay | 14 November 2019, 19:26:43 UTC |
| b87b115 | Paul Hoffman | 14 November 2019, 17:33:31 UTC | Bump develop version | 14 November 2019, 17:33:31 UTC |
| ffe01a8 | Andrew Butler | 13 November 2019, 23:21:25 UTC | Merge branch 'develop' into fix/ExtraDocs | 13 November 2019, 23:21:25 UTC |
| a892d01 | Andrew Butler | 13 November 2019, 23:17:56 UTC | remove roxygen docs for non-exported functions, move to internal section of file | 13 November 2019, 23:17:56 UTC |
| 42f31a5 | Paul Hoffman | 13 November 2019, 18:47:22 UTC | Merge pull request #227 from satijalab/fix/seed Add options to prevent setting random seed | 13 November 2019, 18:47:22 UTC |
| 255399c | Paul Hoffman | 13 November 2019, 18:39:55 UTC | Bump develop version | 13 November 2019, 18:39:55 UTC |
| bc1b556 | Paul Hoffman | 13 November 2019, 18:30:57 UTC | Merge branch 'develop' into fix/seed | 13 November 2019, 18:30:57 UTC |
| 897551f | Paul Hoffman | 13 November 2019, 18:30:42 UTC | Merge pull request #226 from satijalab/fix/CalcN run CalcN for Assays being added | 13 November 2019, 18:30:42 UTC |
| 3905a77 | Paul Hoffman | 13 November 2019, 18:21:06 UTC | Bump develop version | 13 November 2019, 18:21:06 UTC |
| 0f85399 | timoast | 13 November 2019, 18:15:29 UTC | Add options to prevent setting random seed | 13 November 2019, 18:15:29 UTC |
| 220b056 | Andrew Butler | 13 November 2019, 16:48:43 UTC | run CalcN for Assays being added | 13 November 2019, 16:48:43 UTC |
| c329f9a | timoast | 07 November 2019, 19:49:55 UTC | Disallow non-alphanumeric names for [[<- | 07 November 2019, 19:49:55 UTC |
| dcaf879 | Andrew Butler | 07 November 2019, 18:03:41 UTC | Merge pull request #223 from satijalab/fix/checkcellnames Add check for matching cell names in the query and weight.reduction | 07 November 2019, 18:03:41 UTC |
| fd7b948 | Andrew Butler | 07 November 2019, 16:44:40 UTC | bump develop version | 07 November 2019, 16:44:40 UTC |
| aa96b05 | timoast | 07 November 2019, 16:36:15 UTC | Add check for matching cell names in the query and weight.reduction | 07 November 2019, 16:36:15 UTC |
| 7143355 | Paul Hoffman | 05 November 2019, 22:39:24 UTC | Merge pull request #221 from satijalab/fix/CalcN Don't recompute CalcN if counts doesn't change | 05 November 2019, 22:39:24 UTC |
| 3f881a3 | Paul Hoffman | 05 November 2019, 22:33:34 UTC | Bump develop version | 05 November 2019, 22:33:34 UTC |
| 8c9f18d | Paul Hoffman | 05 November 2019, 22:19:54 UTC | Merge branch 'develop' into fix/CalcN | 05 November 2019, 22:19:54 UTC |
| 9c4a7c6 | Paul Hoffman | 05 November 2019, 22:19:45 UTC | Merge pull request #222 from satijalab/fix/UpdateSeuratObject update Seurat object slots before trying to update other classes | 05 November 2019, 22:19:45 UTC |
| 2cfcdbf | Paul Hoffman | 05 November 2019, 22:07:40 UTC | Update DESCRIPTION | 05 November 2019, 22:07:40 UTC |
| 6aacb63 | Andrew Butler | 05 November 2019, 22:00:52 UTC | Merge branch 'develop' into fix/CalcN | 05 November 2019, 22:00:52 UTC |
| 82a08a1 | Andrew Butler | 05 November 2019, 21:54:17 UTC | update Seurat object slots before trying to update other classes | 05 November 2019, 21:54:17 UTC |
| 25dbaeb | Andrew Butler | 01 November 2019, 20:57:25 UTC | Merge pull request #220 from satijalab/fix/totalvar Fix total variance calculation for exact PCA | 01 November 2019, 20:57:25 UTC |
| c77831e | Andrew Butler | 01 November 2019, 20:50:35 UTC | bump develop version | 01 November 2019, 20:50:35 UTC |
| 03c946b | Andrew Butler | 01 November 2019, 20:49:02 UTC | Merge branch 'develop' into fix/totalvar | 01 November 2019, 20:49:02 UTC |
| d70ed44 | Andrew Butler | 01 November 2019, 20:46:40 UTC | Merge pull request #219 from satijalab/fix/FeatureColonNames Fix issue where ggplot2 wasn't recognizing colons in feature names | 01 November 2019, 20:46:40 UTC |
| e0f77ad | Andrew Butler | 01 November 2019, 20:29:26 UTC | Don't recompute CalcN if counts doesn't change | 01 November 2019, 20:29:26 UTC |
| 26e1cf5 | Paul Hoffman | 01 November 2019, 16:25:42 UTC | Bump develop version | 01 November 2019, 16:25:42 UTC |
| c6ee4f9 | timoast | 01 November 2019, 16:23:26 UTC | Fix total variance calculation for exact PCA | 01 November 2019, 16:23:26 UTC |
| fa601b4 | Paul Hoffman | 01 November 2019, 15:50:41 UTC | Fix issue where ggplot2 wasn't recognizing colons in feature names Addresses satijalab/seurat-private#218 | 01 November 2019, 15:50:41 UTC |
| 8d5a8c4 | Andrew Butler | 31 October 2019, 19:59:02 UTC | Merge pull request #2268 from Alanocallaghan/axis-label Axis label | 31 October 2019, 19:59:02 UTC |
| 931a136 | Andrew Butler | 31 October 2019, 19:43:08 UTC | bump develop version | 31 October 2019, 19:43:08 UTC |
| 70862aa | Alan O'Callaghan | 31 October 2019, 12:59:23 UTC | Merge branch 'develop' of github.com:/satijalab/seurat into axis-label | 31 October 2019, 12:59:23 UTC |
| 79a9f53 | Alan O'Callaghan | 31 October 2019, 12:59:14 UTC | Resolve #2267 | 31 October 2019, 12:59:14 UTC |
| 8dddbfe | Andrew Butler | 30 October 2019, 18:01:31 UTC | Merge pull request #216 from satijalab/fix/AmbigMetaData fix issue when meta.data column name was also a feature name | 30 October 2019, 18:01:31 UTC |
| 4c4a7c2 | Andrew Butler | 30 October 2019, 17:55:48 UTC | bump develop version | 30 October 2019, 17:55:48 UTC |
| 3a3e49b | Andrew Butler | 30 October 2019, 17:32:16 UTC | Merge branch 'develop' into fix/AmbigMetaData | 30 October 2019, 17:32:16 UTC |
| ae1d1b4 | Andrew Butler | 28 October 2019, 22:12:42 UTC | Merge pull request #217 from satijalab/fix/UpdateSlots only fill with 1L vector for new slots | 28 October 2019, 22:12:42 UTC |
| 915dcf4 | Andrew Butler | 28 October 2019, 22:07:41 UTC | bump develop version | 28 October 2019, 22:07:41 UTC |
| f566595 | Andrew Butler | 28 October 2019, 21:51:23 UTC | only fill with 1L vector for new slots | 28 October 2019, 21:51:23 UTC |
| 31c657e | Andrew Butler | 28 October 2019, 17:13:29 UTC | Merge branch 'develop' into fix/AmbigMetaData | 28 October 2019, 17:13:29 UTC |
| 328cb97 | Andrew Butler | 25 October 2019, 22:49:15 UTC | Merge pull request #215 from satijalab/feat/ObjectUpdates Allow silent updating of object slots | 25 October 2019, 22:49:15 UTC |
| 379c727 | Andrew Butler | 25 October 2019, 22:39:00 UTC | bump develop version | 25 October 2019, 22:39:00 UTC |
| 52086dc | Paul Hoffman | 25 October 2019, 21:50:12 UTC | devtools::document updated this | 25 October 2019, 21:50:12 UTC |
| 2e6a5db | Paul Hoffman | 25 October 2019, 21:49:27 UTC | Merge branch 'develop' into feat/ObjectUpdates | 25 October 2019, 21:49:27 UTC |
| 10307db | Paul Hoffman | 25 October 2019, 21:44:23 UTC | Remove message when adding global DimReducs | 25 October 2019, 21:44:23 UTC |
| 9ec175a | Paul Hoffman | 25 October 2019, 21:36:47 UTC | Update docs | 25 October 2019, 21:36:47 UTC |
