swh:1:snp:b90de5899ba7dcfda88f4165586b0f4de258411f
Tip revision: a344bd067d344dbcab9a73f7692c5ea96af8fc39 authored by Alexey Sergushichev on 03 November 2022, 18:51:22 UTC
version fix
version fix
Tip revision: a344bd0
collapseDataset.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/collapseDataset.R
\name{collapseDataset}
\alias{collapseDataset}
\title{Collapse dataset}
\usage{
collapseDataset(
es,
isRows = TRUE,
selectOne = FALSE,
fn,
fields,
removeEmpty = TRUE
)
}
\arguments{
\item{es}{Expression set}
\item{isRows}{Work with rows. False if columns (default True - row mode)}
\item{selectOne}{select best match or merge duplicates}
\item{fn}{select/merge function}
\item{fields}{fields to unique on}
\item{removeEmpty}{remove unannotated genes}
}
\value{
Nothing. Collapsed dataset will be assigned to es in environment
}
\description{
\code{collapseDataset} performs a collapse action on expression set
}
\examples{
\dontrun{
es <- getGSE('GSE53986')[[1]]
collapseDataset(es, isRows = TRUE, selectOne = TRUE,
fn = mean, fields = c('Gene ID', 'Gene symbol'))
}
}