swh:1:snp:bbee81fcdc4b36c131a8db323aa6b1ea43209e9a
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Tip revision: 1cc05f63437c1a519a5bdc24b3cc669980d81d48 authored by Charles J. Geyer on 13 May 2019, 18:20:03 UTC
version 1.0-3
Tip revision: 1cc05f6
famnzp.R

 library(aster)

 ifam <- fam.truncated.poisson(truncation = 0)

 # change to include all cases in case splitting
 # see ../src/astfam.c lines 338 to 373
 theta <- seq(-6, 6, 0.5)
 mu <- exp(theta)

 zeroth <- double(length(theta))
 first <- double(length(theta))
 second <- double(length(theta))

 for (i in seq(along = theta)) {
    zeroth[i] <- famfun(ifam, 0, theta[i])
    first[i] <- famfun(ifam, 1, theta[i])
    second[i] <- famfun(ifam, 2, theta[i])
 }

 all.equal(zeroth, log(exp(mu) - 1))
 tau <- mu / (1 - exp(- mu))
 all.equal(first, tau)
 all.equal(second, tau * (1 - tau * exp(- mu)))

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