swh:1:snp:c3876493dcdf8da1d2957e6b67a7a1bacbc80fe5

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Revision Author Date Message Commit Date
be99779 fixes for htseq & macs2 upgrades 02 December 2019, 17:22 UTC
0aa4fbf setting tag size for macs to work in stream mode 30 October 2018, 08:55 UTC
43b3a2d nonamecheck for bedtools intersect 05 July 2016, 08:18 UTC
c01b885 fixed typo 13 June 2016, 17:11 UTC
e1812b9 working with a single bam 11 June 2016, 11:02 UTC
8520bce Saving temp bam file due to pybedtools regression 10 June 2016, 19:26 UTC
9db7206 Update README.md 11 December 2014, 19:34 UTC
e015f87 Merge pull request #1 from ctlab/bedtools Using bedtools to fix multimappers 11 December 2014, 19:32 UTC
5a1d5f3 typo 11 December 2014, 19:31 UTC
7916c16 dependency on pybedtools >= 0.6.9 11 December 2014, 19:26 UTC
3cd2061 Using poybedtools instead of HTseq 11 December 2014, 09:00 UTC
42a8b75 No need to remove fixed bam directory now 10 December 2014, 19:25 UTC
788b415 Not explicitly creating files with fixed bams 10 December 2014, 16:13 UTC
066168e Do not explicitly creating combined stranded bams 10 December 2014, 15:59 UTC
d52579c typo 10 December 2014, 13:34 UTC
f9e9f04 Merge branch 'master' of github.com:ctlab/quant3p 09 December 2014, 18:33 UTC
c2bbee3 Removed debug output 09 December 2014, 18:33 UTC
ae0222f Pasted updated output 29 November 2014, 10:39 UTC
2d09ed0 BAM -> GTF in help 28 November 2014, 18:00 UTC
81a33f0 exonic peaks -> intragenic peaks 28 November 2014, 17:56 UTC
744f9a8 Correct field for mapping quality 28 November 2014, 17:56 UTC
d8acede FIxing alignment quality for multimappers 28 November 2014, 09:34 UTC
a53dbaf Fixed losing last exon 27 November 2014, 19:19 UTC
2538302 Moved back to pysam 27 November 2014, 16:31 UTC
128c86d not fixed bam was used for counting 27 November 2014, 14:24 UTC
484aab0 Merge branch 'master' of github.com:ctlab/quant3p 27 November 2014, 11:12 UTC
e1e5b4b Step-by-step guied in README 27 November 2014, 11:04 UTC
517c920 Fixed copying tags in bam-file 27 November 2014, 11:01 UTC
640a653 Local install in README 27 November 2014, 10:09 UTC
25ee0e8 Added script to do the whole analysis in one piece 27 November 2014, 09:44 UTC
3761faf Transformed into a package 26 November 2014, 14:11 UTC
c2f3a9d slices.bed with intervals used for the example 26 November 2014, 14:10 UTC
6a8590d README and example 26 November 2014, 13:35 UTC
bcf52bd Fixed bam writing 26 November 2014, 13:34 UTC
8152550 Ignoreing peaks that overlaps with exons 26 November 2014, 12:16 UTC
63987b4 Initial commit 26 November 2014, 10:26 UTC
50f5da3 Initial commit 26 November 2014, 10:19 UTC
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