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https://github.com/ctlab/quant3p
25 December 2019, 16:37:49 UTC
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sort by:
RevisionAuthorDateMessageCommit Date
be99779 Alexey Sergushichev02 December 2019, 17:22:45 UTCfixes for htseq & macs2 upgrades02 December 2019, 17:22:45 UTC
0aa4fbf Alexey Sergushichev30 October 2018, 08:55:48 UTCsetting tag size for macs to work in stream mode30 October 2018, 08:55:48 UTC
43b3a2d Alexey Sergushichev05 July 2016, 08:17:47 UTCnonamecheck for bedtools intersect05 July 2016, 08:18:40 UTC
c01b885 Alexey Sergushichev13 June 2016, 17:11:20 UTCfixed typo13 June 2016, 17:11:20 UTC
e1812b9 Alexey Sergushichev11 June 2016, 11:02:57 UTCworking with a single bam11 June 2016, 11:02:57 UTC
8520bce Alexey Sergushichev10 June 2016, 17:59:44 UTCSaving temp bam file due to pybedtools regression10 June 2016, 19:26:46 UTC
9db7206 Alexey Sergushichev11 December 2014, 19:34:20 UTCUpdate README.md11 December 2014, 19:34:20 UTC
e015f87 Alexey Sergushichev11 December 2014, 19:32:33 UTCMerge pull request #1 from ctlab/bedtools Using bedtools to fix multimappers11 December 2014, 19:32:33 UTC
5a1d5f3 Alexey Sergushichev11 December 2014, 19:31:42 UTCtypo11 December 2014, 19:31:42 UTC
7916c16 Alexey Sergushichev11 December 2014, 19:26:37 UTCdependency on pybedtools >= 0.6.911 December 2014, 19:26:37 UTC
3cd2061 Alexey Sergushichev11 December 2014, 09:00:30 UTCUsing poybedtools instead of HTseq11 December 2014, 09:00:30 UTC
42a8b75 Alexey Sergushichev10 December 2014, 19:25:58 UTCNo need to remove fixed bam directory now10 December 2014, 19:25:58 UTC
788b415 Alexey Sergushichev10 December 2014, 16:13:36 UTCNot explicitly creating files with fixed bams10 December 2014, 16:13:36 UTC
066168e Alexey Sergushichev10 December 2014, 15:59:50 UTCDo not explicitly creating combined stranded bams10 December 2014, 15:59:50 UTC
d52579c Alexey Sergushichev10 December 2014, 13:34:20 UTCtypo10 December 2014, 13:34:20 UTC
f9e9f04 Alexey Sergushichev09 December 2014, 18:33:39 UTCMerge branch 'master' of github.com:ctlab/quant3p09 December 2014, 18:33:39 UTC
c2bbee3 Alexey Sergushichev09 December 2014, 18:33:05 UTCRemoved debug output09 December 2014, 18:33:05 UTC
ae0222f Alexey Sergushichev29 November 2014, 10:39:53 UTCPasted updated output29 November 2014, 10:39:53 UTC
2d09ed0 Alexey Sergushichev28 November 2014, 18:00:36 UTCBAM -> GTF in help28 November 2014, 18:00:36 UTC
81a33f0 Alexey Sergushichev28 November 2014, 17:56:51 UTCexonic peaks -> intragenic peaks28 November 2014, 17:56:51 UTC
744f9a8 Alexey Sergushichev28 November 2014, 17:56:32 UTCCorrect field for mapping quality28 November 2014, 17:56:32 UTC
d8acede Alexey Sergushichev28 November 2014, 09:34:40 UTCFIxing alignment quality for multimappers28 November 2014, 09:34:40 UTC
a53dbaf Alexey Sergushichev27 November 2014, 19:19:03 UTCFixed losing last exon27 November 2014, 19:19:03 UTC
2538302 Alexey Sergushichev27 November 2014, 16:31:46 UTCMoved back to pysam27 November 2014, 16:31:46 UTC
128c86d Alexey Sergushichev27 November 2014, 14:24:42 UTCnot fixed bam was used for counting27 November 2014, 14:24:42 UTC
484aab0 Alexey Sergushichev27 November 2014, 11:12:26 UTCMerge branch 'master' of github.com:ctlab/quant3p27 November 2014, 11:12:26 UTC
e1e5b4b Alexey Sergushichev27 November 2014, 11:04:45 UTCStep-by-step guied in README27 November 2014, 11:04:45 UTC
517c920 Alexey Sergushichev27 November 2014, 11:01:25 UTCFixed copying tags in bam-file27 November 2014, 11:01:25 UTC
640a653 Alexey Sergushichev27 November 2014, 10:09:19 UTCLocal install in README27 November 2014, 10:09:19 UTC
25ee0e8 Alexey Sergushichev27 November 2014, 09:44:32 UTCAdded script to do the whole analysis in one piece27 November 2014, 09:44:32 UTC
3761faf Alexey Sergushichev26 November 2014, 14:11:23 UTCTransformed into a package26 November 2014, 14:11:23 UTC
c2f3a9d Alexey Sergushichev26 November 2014, 14:10:22 UTCslices.bed with intervals used for the example26 November 2014, 14:10:22 UTC
6a8590d Alexey Sergushichev26 November 2014, 13:35:42 UTCREADME and example26 November 2014, 13:35:42 UTC
bcf52bd Alexey Sergushichev26 November 2014, 13:34:47 UTCFixed bam writing26 November 2014, 13:34:47 UTC
8152550 Alexey Sergushichev26 November 2014, 12:16:39 UTCIgnoreing peaks that overlaps with exons26 November 2014, 12:16:39 UTC
63987b4 Alexey Sergushichev26 November 2014, 10:26:50 UTCInitial commit26 November 2014, 10:26:50 UTC
50f5da3 Alexey Sergushichev26 November 2014, 10:19:06 UTCInitial commit26 November 2014, 10:19:06 UTC
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