| a134c04 | James Seager | 22 November 2022, 15:00:39 UTC | Add IDs to level 4 headings This is needed for the 'Creating control metagenotypes' heading. | 22 November 2022, 15:00:39 UTC |
| 70793ac | James Seager | 21 June 2022, 10:27:33 UTC | Remove references to PHIDO as an ontology | 21 June 2022, 10:27:33 UTC |
| a442dbc | James Seager | 15 March 2022, 10:53:54 UTC | Add link to phenotype curation process in table of contents See #21 | 15 March 2022, 10:53:54 UTC |
| df3757e | James Seager | 15 March 2022, 10:20:19 UTC | Use single quotes in uri_for | 15 March 2022, 10:20:19 UTC |
| 63d131d | James Seager | 09 March 2022, 14:34:42 UTC | Add text explaining the structure of PHIPO See #21 | 09 March 2022, 14:37:56 UTC |
| da8eadc | James Seager | 09 March 2022, 12:44:54 UTC | Add text linking PHIPO to the OBO Foundry See #21 | 09 March 2022, 14:37:42 UTC |
| 018f3d4 | James Seager | 09 March 2022, 12:37:10 UTC | Define PHIPO in the Curating phenotypes introduction See #21 | 09 March 2022, 12:37:10 UTC |
| 4851488 | James Seager | 09 March 2022, 11:27:00 UTC | Add link to instructions on creating control metagenotypes See #20 | 09 March 2022, 11:27:00 UTC |
| 53a47d0 | James Seager | 09 March 2022, 11:20:00 UTC | Add section for creating control metagenotypes See #20 | 09 March 2022, 11:20:00 UTC |
| e121909 | James Seager | 22 February 2022, 11:59:15 UTC | Add section for curating pathogen effectors Closes #18 | 22 February 2022, 11:59:15 UTC |
| dc897bb | James Seager | 21 February 2022, 15:03:08 UTC | Add delivery mechanism to experimental conditions section Closes #19 | 21 February 2022, 15:03:08 UTC |
| 63aa430 | James Seager | 15 December 2021, 14:03:26 UTC | Merge pull request #17 from PHI-base/physical-interaction Add documentation page for physical interactions | 15 December 2021, 14:03:26 UTC |
| 5fcee26 | James Seager | 13 December 2021, 13:47:51 UTC | Update GO effector curation instructions | 15 December 2021, 13:59:54 UTC |
| 4d298ff | James Seager | 14 December 2021, 10:26:09 UTC | Replace 'organism' with 'species' in physical interaction docs | 14 December 2021, 10:26:09 UTC |
| a30fb89 | James Seager | 13 December 2021, 15:41:44 UTC | Remove comment from physical interaction example | 13 December 2021, 15:41:44 UTC |
| 171e1ae | James Seager | 13 December 2021, 13:53:35 UTC | Clarify that physical interactions can be interspecies | 13 December 2021, 13:53:35 UTC |
| 97e0e6a | James Seager | 09 December 2021, 12:29:38 UTC | Add link to BioGRID help wiki | 09 December 2021, 12:29:38 UTC |
| e2cdd60 | James Seager | 09 December 2021, 12:09:01 UTC | Add documentation for physical interactions | 09 December 2021, 12:24:11 UTC |
| ecdc26d | James Seager | 09 December 2021, 11:55:09 UTC | Add function to add CSS classes to tables | 09 December 2021, 12:24:11 UTC |
| f885327 | James Seager | 09 December 2021, 11:33:42 UTC | Enable tables extension in markdown | 09 December 2021, 12:24:11 UTC |
| cebc413 | James Seager | 09 December 2021, 12:22:52 UTC | Ignore VSCode workspace settings | 09 December 2021, 12:22:52 UTC |
| 6151c0d | James Seager | 09 December 2021, 10:39:23 UTC | Add reminder to curate effector GO terms See #15 | 09 December 2021, 10:39:23 UTC |
| c5d0725 | James Seager | 04 October 2021, 13:56:44 UTC | Update README.md | 04 October 2021, 13:56:44 UTC |
| fb21741 | James Seager | 04 October 2021, 13:56:01 UTC | Ignore __pycache__ directory | 04 October 2021, 13:56:01 UTC |
| 6a6b96c | James Seager | 04 October 2021, 13:09:16 UTC | Add requirements.txt | 04 October 2021, 13:09:16 UTC |
| cd1ab35 | James Seager | 04 October 2021, 12:39:40 UTC | Replace PythonMagick with Pillow | 04 October 2021, 12:39:40 UTC |
| 9e11faa | James Seager | 04 October 2021, 12:10:46 UTC | Reorder imports | 04 October 2021, 12:37:03 UTC |
| e22c292 | James Seager | 29 April 2021, 09:27:33 UTC | Fix letter casing in 'BRENDA Tissue Ontology' | 29 April 2021, 09:27:33 UTC |
| 6006d65 | James Seager | 29 April 2021, 09:26:20 UTC | Add missing bold markup | 29 April 2021, 09:26:20 UTC |
| 05ffeba | James Seager | 12 April 2021, 14:26:26 UTC | Fix bugs in image link template | 12 April 2021, 14:26:26 UTC |
| 9583ea9 | James Seager | 12 April 2021, 13:39:15 UTC | Merge pull request #13 from PHI-base/disease_annotation Add documentation for disease annotations | 12 April 2021, 13:39:15 UTC |
| 25831ac | James Seager | 12 April 2021, 13:32:23 UTC | Add text on correct usage of disease annotations | 12 April 2021, 13:32:23 UTC |
| e7e090d | James Seager | 12 April 2021, 13:28:49 UTC | Fix disease annotation images with wrong metagenotype | 12 April 2021, 13:28:49 UTC |
| 01253fa | James Seager | 23 March 2021, 14:01:28 UTC | Add disease annotation link to index page | 23 March 2021, 14:01:28 UTC |
| d192ef9 | James Seager | 23 March 2021, 13:50:23 UTC | Move 'Annotation extensions' section in disease_annotation.md Now a subsection of 'The disease curation process'. | 23 March 2021, 13:50:23 UTC |
| f4fe69b | James Seager | 23 March 2021, 13:47:10 UTC | Add images for disease annotation documentation | 23 March 2021, 13:47:10 UTC |
| 7e039a6 | James Seager | 23 March 2021, 12:15:28 UTC | Make directories if they don't exist | 23 March 2021, 12:15:28 UTC |
| b43685d | James Seager | 23 March 2021, 12:10:54 UTC | Rename image_tmpl to image_template | 23 March 2021, 12:10:54 UTC |
| e1ae6d7 | James Seager | 23 March 2021, 12:10:13 UTC | Process images with PythonMagick | 23 March 2021, 12:10:13 UTC |
| 2ec8dae | James Seager | 23 March 2021, 12:05:31 UTC | Extract code to make_mhtml_from_md function | 23 March 2021, 12:05:31 UTC |
| e04ba98 | James Seager | 23 March 2021, 11:47:12 UTC | Add get_filename function | 23 March 2021, 11:51:26 UTC |
| 48c3f83 | James Seager | 23 March 2021, 11:46:46 UTC | Use inspect.cleandoc for multiline strings | 23 March 2021, 11:51:16 UTC |
| 9df7d93 | James Seager | 23 March 2021, 09:41:53 UTC | Use typographic quote marks in disease_annotation.md | 23 March 2021, 09:41:53 UTC |
| 2068616 | James Seager | 23 March 2021, 09:37:53 UTC | Add explanation of extension semantics to disease annotation | 23 March 2021, 09:37:53 UTC |
| aa721b1 | James Seager | 23 March 2021, 09:36:02 UTC | Fix finalizing annotation section for disease annotation | 23 March 2021, 09:36:02 UTC |
| f16b0a0 | James Seager | 18 March 2021, 15:09:26 UTC | Update explanation of internal extension relation names | 18 March 2021, 15:09:26 UTC |
| 6af17f4 | James Seager | 18 March 2021, 15:09:02 UTC | Update term suggestion instructions | 18 March 2021, 15:09:02 UTC |
| cd27c3a | James Seager | 18 March 2021, 15:08:27 UTC | Remove text on extension temporality from disease_annotation.md | 18 March 2021, 15:08:27 UTC |
| f7d9d9d | James Seager | 18 March 2021, 14:59:18 UTC | Update comments section on disease annotation docs | 18 March 2021, 14:59:18 UTC |
| c9a5721 | James Seager | 18 March 2021, 13:31:18 UTC | Copy disease updates to phipo_annotation.md Some shared text needs to be changed in both documents. | 18 March 2021, 14:48:51 UTC |
| c8b11f9 | James Seager | 18 March 2021, 13:29:06 UTC | Add documentation for disease annotation | 18 March 2021, 14:48:51 UTC |
| 17908e6 | James Seager | 18 March 2021, 14:33:16 UTC | Update annotation comments section Add documentation for Figure field, remove redundant text, and add more headings. Closes #12 | 18 March 2021, 14:33:16 UTC |
| 33df5e4 | James Seager | 17 March 2021, 14:45:39 UTC | Ignore 'build' directory | 17 March 2021, 14:45:39 UTC |
| 704a95a | James Seager | 17 March 2021, 14:45:22 UTC | Add script to compile docs to Mason templates | 17 March 2021, 14:45:22 UTC |
| e40fb44 | James Seager | 11 March 2021, 14:57:37 UTC | Add documentation for 'inverse gene-for-gene interaction' extension See #3 | 11 March 2021, 14:57:37 UTC |
| 944cb82 | James Seager | 11 March 2021, 14:49:06 UTC | Remove documentation of 'disease caused' extension See #9 | 11 March 2021, 14:49:06 UTC |
| 8952749 | James Seager | 11 March 2021, 14:26:12 UTC | Fix obsolete term in annotation_extensions.png See #11 | 11 March 2021, 14:26:12 UTC |
| 3cac8aa | James Seager | 11 March 2021, 14:22:37 UTC | Fix obsolete term in phi_annotation.png See #11 | 11 March 2021, 14:22:37 UTC |
| 7331b41 | James Seager | 28 January 2021, 12:51:32 UTC | Update text for wild-type alleles in genotypes | 28 January 2021, 12:51:32 UTC |
| e1153c0 | James Seager | 20 January 2021, 10:58:05 UTC | Minor grammar edits to metagenotype actions | 20 January 2021, 10:58:05 UTC |
| b82fbf1 | James Seager | 20 January 2021, 10:56:12 UTC | Add more missing gene-for-gene documentation See #3 | 20 January 2021, 10:56:12 UTC |
| 487312f | James Seager | 20 January 2021, 10:48:23 UTC | Add more text links to Curating phenotypes page | 20 January 2021, 10:48:23 UTC |
| 554d469 | James Seager | 19 January 2021, 15:19:32 UTC | Add text describing curation of control metagenotypes See #5 | 19 January 2021, 15:19:32 UTC |
| 1ebd4e3 | James Seager | 19 January 2021, 12:59:37 UTC | Include 'disease caused' in gene-for-gene extensions See #3 | 19 January 2021, 12:59:37 UTC |
| 26d80dd | James Seager | 19 January 2021, 12:58:01 UTC | Fix typo in gene-for-gene interaction extension text See #3 | 19 January 2021, 12:58:01 UTC |
| 277839d | James Seager | 19 January 2021, 12:57:32 UTC | Add gene-for-gene phenotype link to index page See #3 | 19 January 2021, 12:57:32 UTC |
| bdd5650 | James Seager | 19 January 2021, 12:29:10 UTC | Add RNA level and Protein level links to index page See #2 | 19 January 2021, 12:29:10 UTC |
| 4ecdcdf | James Seager | 19 January 2021, 12:03:32 UTC | Fix naming of 'host tissue infected' extension | 19 January 2021, 12:03:32 UTC |
| 46197b6 | James Seager | 19 January 2021, 11:45:09 UTC | Add initial text for 'outcome of interaction' extension See #7 | 19 January 2021, 11:45:09 UTC |
| bc71771 | James Seager | 19 January 2021, 11:44:13 UTC | Add text for 'compared to control genotype' extension See #8 The equivalent text for gene-for-gene phenotypes is in commit fa0114d | 19 January 2021, 11:44:13 UTC |
| 9e4d1f3 | James Seager | 19 January 2021, 11:37:12 UTC | Update metagenotype annotation link image Add link for gene-for-gene phenotype See #3 | 19 January 2021, 11:37:12 UTC |
| fa0114d | James Seager | 19 January 2021, 11:36:51 UTC | Add text for gene-for-gene phenotype and extensions See #3 | 19 January 2021, 11:36:51 UTC |
| 572dbd4 | James Seager | 09 September 2020, 13:33:53 UTC | Update README.md | 09 September 2020, 13:33:53 UTC |
| eda6782 | James Seager | 09 September 2020, 13:15:14 UTC | Add help documents and images | 09 September 2020, 13:15:14 UTC |
| dac55db | James Seager | 09 September 2020, 13:01:22 UTC | Initial commit | 09 September 2020, 13:01:22 UTC |
