7117885 | ST John | 29 April 2021, 10:40:46 UTC | fix other test | 29 April 2021, 10:40:46 UTC |
9779e57 | ST John | 29 April 2021, 10:33:24 UTC | update RELEASE.md and bump version to 2.2.1 | 29 April 2021, 10:33:24 UTC |
baa5139 | ST John | 29 April 2021, 10:31:56 UTC | bugfix | 29 April 2021, 10:31:56 UTC |
9132075 | ST John | 29 April 2021, 10:31:48 UTC | regression test (fails) | 29 April 2021, 10:31:48 UTC |
1205617 | st-- | 27 April 2021, 17:13:01 UTC | bump version and update RELEASE.md (#1676) | 27 April 2021, 17:13:01 UTC |
b4e6298 | st-- | 27 April 2021, 16:17:09 UTC | Posterior object for fast predictions (#1636) GPflow had already been optimised for speed in the training loop. This PR addresses the speed of predictions and resolves (partially) #1599. We achieve this by introducing new Posterior objects that can cache the results of a "precompute" stage (everything that's independent of test points) and thereby significantly speeds up repeated predictions. Co-authored-by: ST John <st--@users.noreply.github.com> Co-authored-by: stefanos <stefanosele@users.no-reply.github.com> Co-authored-by: John Mcleod <43960404+johnamcleod@users.noreply.github.com> | 27 April 2021, 16:17:09 UTC |
a8ee4ae | John Mcleod | 22 April 2021, 21:45:22 UTC | Update HOWTO_RELEASE.md. (#1670) | 22 April 2021, 21:45:22 UTC |
1e1de82 | st-- | 15 April 2021, 19:51:46 UTC | Change URL for GPflow logo in README.md to absolute, so that it will render correctly on PyPI (#1669) | 15 April 2021, 19:51:46 UTC |
9f50087 | John Mcleod | 15 April 2021, 15:40:55 UTC | Bump version to 2.1.5 (#1666) * Bump version to 2.1.5 * add release notes section for 2.2.0. | 15 April 2021, 15:40:55 UTC |
1d96af4 | st-- | 13 April 2021, 16:01:09 UTC | fix gpflow.config module-level docstring (#1664) | 13 April 2021, 16:01:09 UTC |
bfb60c0 | John Mcleod | 13 April 2021, 14:22:50 UTC | John/iic whiten (#1663) * Add test with whiten * Make format * Update RELEASE.md Co-authored-by: st-- <st--@users.noreply.github.com> | 13 April 2021, 14:22:50 UTC |
0812cd3 | John Mcleod | 13 April 2021, 13:46:10 UTC | John/fc whiten (#1662) * Add test for white=False * Make format * Update RELEASE.md | 13 April 2021, 13:46:10 UTC |
ea39cba | st-- | 12 April 2021, 15:35:40 UTC | Add RELEASE.md (#1661) * Add RELEASE.md inspired by TensorFlow and include in PR template * add HOWTO_RELEASE.md | 12 April 2021, 15:35:40 UTC |
4e6f9ce | st-- | 08 April 2021, 12:46:26 UTC | Clean up utilities subpackage (#1650) Separates gpflow.utilities.utilities into gpflow.utilities.misc and gpflow.utilities.traversal. Though user code ought to access all functions directly through gpflow.utilities, not its submodules, a backwards-compatible redirect is provided. Also moves tests around to improve module structure. | 08 April 2021, 12:46:26 UTC |
afb7699 | st-- | 06 April 2021, 10:44:42 UTC | bring back full list of all contributors throughout time (#1660) * bring back full list of all contributors throughout time * updated PR template * links to github accounts | 06 April 2021, 10:44:42 UTC |
21e5317 | John Mcleod | 06 April 2021, 10:15:35 UTC | Proposed fix for the fully_correlated_conditional_repeat issue (#1652) Fixes #1651 | 06 April 2021, 10:15:35 UTC |
5b76536 | John Mcleod | 06 April 2021, 09:31:52 UTC | Fix fallback inducing points with multioutput Kuf. (#1654) Fixes #1653 | 06 April 2021, 09:31:52 UTC |
405eb97 | st-- | 19 March 2021, 14:04:42 UTC | Update README.md (#1603) * reorganization of structure * update maintainers * update project list, including link to signature covariances project * table of contents | 19 March 2021, 14:04:42 UTC |
629e7b2 | st-- | 15 March 2021, 17:16:31 UTC | fix bug (that masked test failure!) in test_method_equivalence (#1649) * fix bug (that masked test failure!) in test_method_equivalence and improve collection speed * optimize non-whitened SVGP model more strongly to get test_equivalence to pass * remove --use-feature=2020-resolver (will become an error in pip 21.0) | 15 March 2021, 17:16:31 UTC |
1831a5d | st-- | 07 March 2021, 14:05:42 UTC | Update README and require TensorFlow>=2.2 (#1647) Add explanation of TensorFlow/TFP dependencies (as brought up by https://github.com/GPflow/GPflow/issues/1623) | 07 March 2021, 14:05:42 UTC |
94fa390 | st-- | 25 February 2021, 16:12:48 UTC | New _add_noise_cov method for GPR model class to make it more easily extensible (#1645) | 25 February 2021, 16:12:48 UTC |
3ea8731 | Vatsal Aggarwal | 18 February 2021, 16:29:39 UTC | Compatibility between Monitor API and SciPy optimizer (#1642) Co-authored-by: st-- <st--@users.noreply.github.com> | 18 February 2021, 16:29:39 UTC |
406d2d0 | Samuel Willis | 03 February 2021, 13:45:29 UTC | fix ModelToTensorBoard max_size = -1 (#1619) | 03 February 2021, 13:45:29 UTC |
797fed1 | st-- | 03 February 2021, 12:38:37 UTC | Mypy build fix (#1637) | 03 February 2021, 12:38:37 UTC |
bc04306 | Vincent Dutordoir | 13 January 2021, 16:31:51 UTC | Quickfix dynamic shapes in quadrature (#1626) | 13 January 2021, 16:31:51 UTC |
721756a | jakoblindinger | 12 January 2021, 12:31:17 UTC | list structured-dgp as downstream project (#1621) Co-authored-by: st-- <st--@users.noreply.github.com> | 12 January 2021, 12:31:17 UTC |
7688477 | st-- | 12 January 2021, 11:59:48 UTC | Fix tests for TF 2.4/TFP 0.12 (#1625) * fix test_deepcopy * increase test_scipy_jit tolerance to make it pass | 12 January 2021, 11:59:48 UTC |
60e19f8 | st-- | 01 December 2020, 11:59:33 UTC | bump version to 2.1.4 (#1612) | 01 December 2020, 11:59:33 UTC |
61fc327 | Joel Berkeley | 26 November 2020, 17:14:04 UTC | list trieste as downstream project (#1611) * list trieste as downstream project Co-authored-by: Joel Berkeley <joel.berkeley@secondmind.ai> Co-authored-by: st-- <st--@users.noreply.github.com> | 26 November 2020, 17:14:04 UTC |
282d1cd | polaschwoebel | 15 October 2020, 17:54:23 UTC | HeteroskedasticTFPConditional should construct tensors at class-construction, not at module-import time (#1598) | 15 October 2020, 17:54:23 UTC |
8562503 | st-- | 08 October 2020, 15:04:55 UTC | Replace len(inducing_variable) with inducing_variable.num inducing property (#1594) Adds support for inducing variables with dynamically changing shape. Change usage from `len(inducing_variable)` to `inducing_variable.num_inducing` instead. Resolves #1578. | 08 October 2020, 15:04:55 UTC |
9f95d87 | st-- | 07 October 2020, 12:01:42 UTC | bump version to 2.1.3 (#1590) | 07 October 2020, 12:01:42 UTC |
cfd1830 | st-- | 07 October 2020, 11:46:04 UTC | Doc requirements update (#1592) * update doc requirements * update copyright | 07 October 2020, 11:46:04 UTC |
638c4ed | st-- | 07 October 2020, 10:07:35 UTC | Bugfix for independent_interdomain_conditional (#1583) Resolves #818 Co-authored-by: ST John <st@secondmind.ai> | 07 October 2020, 10:07:35 UTC |
39c8a76 | st-- | 06 October 2020, 15:25:12 UTC | enable trigger-docs-generation for master branch as well (#1580) Co-authored-by: ST John <st@secondmind.ai> | 06 October 2020, 15:25:12 UTC |
3baf368 | st-- | 06 October 2020, 15:03:54 UTC | Remove tiling workaround for lack of broadcasting in previous TensorFlow versions (#1585) We used to tile in gauss_kl() to work around TensorFlow's lack of broadcasting. Since TensorFlow 2.2, this is finally working, and this PR removes the tiling for TensorFlow>=2.2. Resolves #1321. Co-authored-by: ST John <st@secondmind.ai> | 06 October 2020, 15:03:54 UTC |
e248051 | st-- | 06 October 2020, 14:12:33 UTC | update intro_to_gpflow2 notebook to account for saved_model now working (#1586) Co-authored-by: ST John <st@secondmind.ai> Co-authored-by: Sandeep Tailor <s.tailor@insysion.net> | 06 October 2020, 14:12:33 UTC |
98f7997 | st-- | 06 October 2020, 13:30:52 UTC | fix broken API docs (#1587) * move Version check inside reset_cache_bijectors to not confuse Sphinx * revert non-working "projects: 7" line in bugs issue template * fix code-block type in intro.rst | 06 October 2020, 13:30:52 UTC |
8dc912e | st-- | 06 October 2020, 12:37:15 UTC | Fix notebook heading levels and add links (#1579) * fix heading levels * add cross-references | 06 October 2020, 12:37:15 UTC |
7d6a6da | st-- | 05 October 2020, 15:50:31 UTC | Update issue templates (#1581) * automatically add bugs to bug project board * disable blank issues Co-authored-by: ST John <st@secondmind.ai> | 05 October 2020, 15:50:31 UTC |
b74e19e | st-- | 05 October 2020, 10:48:01 UTC | Explicit NotImplementedError on predict_y/predict_log_density with full_(output_)cov=True (#1582) Closes #1569 Co-authored-by: ST John <st@secondmind.ai> | 05 October 2020, 10:48:01 UTC |
8e0744a | st-- | 30 September 2020, 16:57:30 UTC | bump version to 2.1.2 (#1575) | 30 September 2020, 16:57:30 UTC |
65a79e4 | st-- | 30 September 2020, 16:42:05 UTC | isort for consistent imports (#1572) * GPflow now includes an isort check in its CI build. Run with `make format` / `make format-check`. | 30 September 2020, 16:42:05 UTC |
d618fe5 | st-- | 30 September 2020, 13:54:44 UTC | Likelihood quadrature cleanup (#1571) * Global constant for num_gauss_hermite_points default * QuadratureLikelihood with dependency injection (in preparation for unifying with MonteCarloLikelihood) * ScalarLikelihood as QuadratureLikelihood subclass (with _quadrature_dim/_quadrature_log_prob/_quadrature_reduction) * HeteroskedasticTFPConditional: rename argument to `scale_transform` and remove undocumented scaling * DeprecationWarning for deprecated code | 30 September 2020, 13:54:44 UTC |
12395be | st-- | 29 September 2020, 15:17:18 UTC | fix BijectorCache workaround (#1574) Follow-up to #1553 | 29 September 2020, 15:17:18 UTC |
0d3684b | joelberkeley-pio | 17 September 2020, 15:33:35 UTC | add packaging to dependencies; add 'import gpflow' check (#1568) | 17 September 2020, 15:33:35 UTC |
ad6e031 | Vincent Dutordoir | 15 September 2020, 15:37:25 UTC | Multi Latent Likelihoods using new quadrature Likelihoods (#1559) * HeteroskedasticLikelihood base class draft * fixup * cleanup * cleanup heteroskedastic * multioutput likelihood WIP * Notebook exemplifying HeteroskedasticTFPDistribution usage (#1462) * fixes * typo fix; reshaping fix * notebook showing how to use HeteroskedasticTFPDistribution likelihood * converting to .pct.py format * removed .ipynb * better descriptions * black auto-formatting Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> * note and bugfix * add comment * Adding heteroskedastic tests (#1508) These tests ensure that heteroskedastic likelihood with a constant variance, will give the same results as a Gaussian likelihood with the same variance. * testing * added QuadratureLikelihood to base, refactored ScalarLikelihood to use it * fix * using the first dimension to hold the quadrature summation * adapting ndiagquad wrapper * merged with gustavocmv/quadrature-change-shape * removed unecessary tf.init_scope * removed print and tf.print * removed print and tf.print * Type annotations Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * Work * Fix test * Remove multioutput from PR * Fix notebook * Add student t test * More tests * Copyright * Removed NDiagGHQuadratureLikelihood class in favor of non-abstract QuadratureLikelihood * _set_latent_and_observation_dimension_eagerly * n_gh ---> num_gauss_hermite_points * removed NDiagGHQuadratureLikelihood from test * black * bugfix * removing NDiagGHQuadratureLikelihood from test * fixed bad commenting * black * refactoring scalar likelihood * adding dtype casts to quadrature * black * small merging fixes * DONE: swap n_gh for num_gauss_hermite_points * black Co-authored-by: ST John <st@prowler.io> Co-authored-by: gustavocmv <47801305+gustavocmv@users.noreply.github.com> Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: joshuacoales-pio <47976939+joshuacoales-pio@users.noreply.github.com> | 15 September 2020, 15:37:25 UTC |
799b659 | gustavocmv | 15 September 2020, 12:36:38 UTC | Scalar Likelihood Refactoring (#1566) * refactoring scalar likelihood * adding dtype casts to quadrature * black Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> | 15 September 2020, 12:36:38 UTC |
0336b27 | st-- | 14 September 2020, 17:00:04 UTC | Merge pull request #1564 from GPflow/st/remerge_master_210 Merge master back into develop | 14 September 2020, 17:00:04 UTC |
d51c487 | st-- | 14 September 2020, 16:39:27 UTC | Merge branch 'develop' into st/remerge_master_210 | 14 September 2020, 16:39:27 UTC |
234a734 | ST John | 14 September 2020, 16:38:41 UTC | Merge remote-tracking branch 'origin/master' into st/remerge_master_210 | 14 September 2020, 16:38:41 UTC |
5c49580 | st-- | 14 September 2020, 16:33:55 UTC | bump version to 2.1.1 (#1562) | 14 September 2020, 16:33:55 UTC |
67e583c | Artem Artemev | 10 September 2020, 13:41:58 UTC | Fix SGPR upper bound for non zero mean functions (#1560) | 10 September 2020, 13:41:58 UTC |
a0df00c | st-- | 10 September 2020, 11:45:58 UTC | add license text to all gpflow submodules (#1480) Adds Copyright notice and Apache license text (short form) to the preamble of all python files underneath gpflow/. Also unifies the copyright notice to simply state "The GPflow Contributors" to simplify maintenance of the copyright notices (this does not affect who holds copyright). | 10 September 2020, 11:45:58 UTC |
7b2a0c8 | st-- | 08 September 2020, 15:44:27 UTC | Fixes for tf 2.3 / tfp 0.11.0 compatiblity (#1553) * tensorflow_probability has been changing internals around their caching; here we update the cache-clearing for our deepcopy so that it works both for tensorflow_probability < 0.11.0, == 0.11.0 (with a workaround for the bug contained therein), and > 0.11.0 (in their master branch they fixed the bug and changed internals again) * revert pinning of tf/tfp, numpy, scipy; rely on `pip --use-feature=2020-resolver` * pin black==19.10b0 as the 20.8b0 upgrade changes formatting a lot * disable test broken by tensorflow 2.3 Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> | 08 September 2020, 15:44:27 UTC |
f3c5110 | Vincent Dutordoir | 27 August 2020, 11:22:49 UTC | Release 2.1.0 (#1552) * Update pull request template (#1510) Clarify template to make it easier for contributors to fill in relevant information. * Temporary workaround for tensorflow_probability dependency issue (#1522) * pin cloudpickle==1.3.0 as temporary workaround for tensorflow/probability#991 to unblock our build (to be reverted once fixed upstream) * Update readme with new project using GPflow (#1530) * fix bug in varying_noise notebook (#1526) * Fix formatting in docs (intro.md) and restore link removed by #1498 (#1520) * pin tensorflow<2.3 tensorflow-probability<0.11 (#1537) * Quadrature Refactoring (#1505) * WIP: quadrature refactoring * Removing old ndiagquad code * deleted test code * formatting and type-hint * merge modules * black formatting * formatting * solving failing tests * fixing failing tests * fixes * adapting tests for new syntax, keeping numerical behavior * black formatting * remove printf * changed code for compiled tf compatibility * black * restored to original version * undoing changes * renaming * renaming * renaming * reshape kwargs * quadrature along axis=-2, simplified broadcasting * black * docs * docs * helper function * docstrings and typing * added new and old quadrature equivalence tests * black * Removing comments Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * Typo Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * notation Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * reshape_Z_dZ return docstring fix * FIX: quad_old computed with the ndiagquad_old Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * more readable implementation Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * tf.ensure_shape added * removed ndiagquad * removed ndiagquad * Revert "removed ndiagquad" This reverts commit 7bb0e9f1e0f2b0e225a2b8a5b3092c4c2f24ba91. * FIX: shape checking of dZ * Revert "removed ndiagquad" This reverts commit 8e235241a697696e361158c30ff9aa9b4cc69f8a. Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: ST John <st@prowler.io> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * Add base_conditional_with_lm function (#1528) * Added base_conditional_with_lm function, which accepts Lm instead of Kmm Co-authored-by: Neil Ferguson <neil@prowler.io> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> Co-authored-by: st-- <st--@users.noreply.github.com> * Fixed separate_independent_conditional to correctly handle q_sqrt=None. (#1533) * Fixed separate_independent_conditional to correctly handle q_sqrt=None. Co-authored-by: Aidan Scannell <scannell.aidan@gmail.com> Co-authored-by: st-- <st--@users.noreply.github.com> * Bump version numbers to 2.1.0. (#1544) * Re-introduce pytest-xdist (#1541) Enables pytest-xdist for locally running tests (`make test`) on multiple cores in parallel. * check dependency versions are valid on CI (#1536) * Update to not use custom image (#1545) * Update to not use custom image * Add test requirements * Update parameter to be savable (#1518) * Fix for quadrature failure mode when autograph was set to False (#1548) * Fix and test * Change shape of quadrature tensors for better broadcasting (#1542) * using the first dimension to hold the quadrature summation * adapting ndiagquad wrapper * Changed bf for bX in docstrings Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * Update min TFP supported version to 0.10 (#1551) * Broadcasting constant and zero mean function (#1550) * Broadcasting constant and zero mean function * Use rank instead of ndim Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: joelberkeley-pio <joel.berkeley@prowler.io> Co-authored-by: gustavocmv <47801305+gustavocmv@users.noreply.github.com> Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: ST John <st@prowler.io> Co-authored-by: Neil Ferguson <nfergu@users.noreply.github.com> Co-authored-by: Neil Ferguson <neil@prowler.io> Co-authored-by: Aidan Scannell <as12528@my.bristol.ac.uk> Co-authored-by: Aidan Scannell <scannell.aidan@gmail.com> Co-authored-by: Sandeep Tailor <s.tailor@insysion.net> Co-authored-by: Artem Artemev <art.art.v@gmail.com> | 27 August 2020, 11:22:49 UTC |
5a945d6 | Vincent Dutordoir | 27 August 2020, 11:07:08 UTC | Broadcasting constant and zero mean function (#1550) * Broadcasting constant and zero mean function * Use rank instead of ndim | 27 August 2020, 11:07:08 UTC |
903b60d | Vincent Dutordoir | 27 August 2020, 10:50:00 UTC | Update min TFP supported version to 0.10 (#1551) | 27 August 2020, 10:50:00 UTC |
d025f96 | gustavocmv | 24 August 2020, 18:54:38 UTC | Change shape of quadrature tensors for better broadcasting (#1542) * using the first dimension to hold the quadrature summation * adapting ndiagquad wrapper * Changed bf for bX in docstrings Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> | 24 August 2020, 18:54:38 UTC |
6894af5 | Vincent Dutordoir | 24 August 2020, 10:55:29 UTC | Fix for quadrature failure mode when autograph was set to False (#1548) * Fix and test | 24 August 2020, 10:55:29 UTC |
8c65ef6 | Artem Artemev | 17 August 2020, 13:26:52 UTC | Update parameter to be savable (#1518) | 17 August 2020, 13:26:52 UTC |
4682722 | Vincent Dutordoir | 14 August 2020, 09:53:16 UTC | Update to not use custom image (#1545) * Update to not use custom image * Add test requirements | 14 August 2020, 09:53:16 UTC |
79b1a0b | joelberkeley-pio | 13 August 2020, 12:09:56 UTC | check dependency versions are valid on CI (#1536) | 13 August 2020, 12:09:56 UTC |
f9eb123 | st-- | 13 August 2020, 11:46:44 UTC | Re-introduce pytest-xdist (#1541) Enables pytest-xdist for locally running tests (`make test`) on multiple cores in parallel. | 13 August 2020, 11:46:44 UTC |
6bb7df9 | Sandeep Tailor | 13 August 2020, 10:08:36 UTC | Bump version numbers to 2.1.0. (#1544) | 13 August 2020, 10:08:36 UTC |
5744b51 | Aidan Scannell | 04 August 2020, 17:31:56 UTC | Fixed separate_independent_conditional to correctly handle q_sqrt=None. (#1533) * Fixed separate_independent_conditional to correctly handle q_sqrt=None. Co-authored-by: Aidan Scannell <scannell.aidan@gmail.com> Co-authored-by: st-- <st--@users.noreply.github.com> | 04 August 2020, 17:31:56 UTC |
20c5ee4 | Neil Ferguson | 03 August 2020, 14:38:29 UTC | Add base_conditional_with_lm function (#1528) * Added base_conditional_with_lm function, which accepts Lm instead of Kmm Co-authored-by: Neil Ferguson <neil@prowler.io> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> Co-authored-by: st-- <st--@users.noreply.github.com> | 03 August 2020, 14:38:29 UTC |
d995194 | gustavocmv | 30 July 2020, 11:58:40 UTC | Quadrature Refactoring (#1505) * WIP: quadrature refactoring * Removing old ndiagquad code * deleted test code * formatting and type-hint * merge modules * black formatting * formatting * solving failing tests * fixing failing tests * fixes * adapting tests for new syntax, keeping numerical behavior * black formatting * remove printf * changed code for compiled tf compatibility * black * restored to original version * undoing changes * renaming * renaming * renaming * reshape kwargs * quadrature along axis=-2, simplified broadcasting * black * docs * docs * helper function * docstrings and typing * added new and old quadrature equivalence tests * black * Removing comments Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * Typo Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * notation Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * reshape_Z_dZ return docstring fix * FIX: quad_old computed with the ndiagquad_old Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * more readable implementation Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> * tf.ensure_shape added * removed ndiagquad * removed ndiagquad * Revert "removed ndiagquad" This reverts commit 7bb0e9f1e0f2b0e225a2b8a5b3092c4c2f24ba91. * FIX: shape checking of dZ * Revert "removed ndiagquad" This reverts commit 8e235241a697696e361158c30ff9aa9b4cc69f8a. Co-authored-by: Gustavo Carvalho <gustavo.carvalho@delfosim.com> Co-authored-by: ST John <st@prowler.io> Co-authored-by: Vincent Dutordoir <dutordoirv@gmail.com> | 30 July 2020, 11:58:40 UTC |
65aea21 | joelberkeley-pio | 30 July 2020, 10:13:27 UTC | pin tensorflow<2.3 tensorflow-probability<0.11 (#1537) | 30 July 2020, 10:13:27 UTC |
3c17a7d | st-- | 17 July 2020, 13:13:20 UTC | Fix formatting in docs (intro.md) and restore link removed by #1498 (#1520) | 17 July 2020, 13:13:20 UTC |
937222e | st-- | 16 July 2020, 20:02:21 UTC | fix bug in varying_noise notebook (#1526) | 16 July 2020, 20:02:21 UTC |
f1842a9 | Vincent Dutordoir | 16 July 2020, 10:25:35 UTC | Update readme with new project using GPflow (#1530) | 16 July 2020, 10:25:35 UTC |
d69b17d | st-- | 06 July 2020, 10:31:03 UTC | Temporary workaround for tensorflow_probability dependency issue (#1522) * pin cloudpickle==1.3.0 as temporary workaround for tensorflow/probability#991 to unblock our build (to be reverted once fixed upstream) | 06 July 2020, 10:31:03 UTC |
34b023a | st-- | 02 July 2020, 15:32:57 UTC | Merge pull request #1512 from GPflow/master Update develop with master | 02 July 2020, 15:32:57 UTC |
965189d | st-- | 02 July 2020, 10:10:16 UTC | Update pull request template (#1510) Clarify template to make it easier for contributors to fill in relevant information. | 02 July 2020, 10:10:16 UTC |
acaccfd | polaschwoebel | 23 June 2020, 10:52:20 UTC | updated models.gpr docstring (#1511) Doc update. Resolves https://github.com/GPflow/docs/issues/4 * updated models.gpr docstring * Elaboration. Co-authored-by: Pola Elisabeth Schwobel <posc@MacBook-Pro.local> Co-authored-by: Mark van der Wilk <markvanderw@gmail.com> | 23 June 2020, 10:52:20 UTC |
31dbbe5 | joelberkeley-pio | 11 June 2020, 14:37:47 UTC | Merge pull request #1506 from GPflow/develop Release 2.0.5 | 11 June 2020, 14:37:47 UTC |
3669d13 | joelberkeley-pio | 11 June 2020, 13:18:56 UTC | bump version to 2.0.5 (#1504) | 11 June 2020, 13:18:56 UTC |
7db2276 | joelberkeley-pio | 11 June 2020, 10:59:20 UTC | fix type in Parameter type check (#1500) | 11 June 2020, 10:59:20 UTC |
a9e125e | John Mcleod | 11 June 2020, 09:05:30 UTC | Ensure the plots appear in the generated documentation. (#1503) | 11 June 2020, 09:05:30 UTC |
390e4f0 | adam | 10 June 2020, 12:55:02 UTC | Update link to distill article on GPs (#1498) Note that this links to a *different* article from the previous one - we will add the old link back in as well once it is back online. | 10 June 2020, 12:55:02 UTC |
77eacca | Vincent Dutordoir | 04 June 2020, 16:03:48 UTC | Supporting preslicing of multi-output combination kernels (#1495) | 04 June 2020, 16:03:48 UTC |
6fda0e9 | st-- | 04 June 2020, 14:24:52 UTC | improve NaturalGradient optimizer documentation and add shape checks (#1489) As discussed in #878, GPflow's NaturalGradient optimizer does not implement the diagonal covariance parametrization (`q_diag=True`). This PR clarifies this in the documentation and adds extra shape checks. | 04 June 2020, 14:24:52 UTC |
647ca90 | Prakhar Verma | 02 June 2020, 15:09:19 UTC | Corrected variables name in convolutional notebook for better understanding (#1492) | 02 June 2020, 15:09:19 UTC |
12243a6 | st-- | 02 June 2020, 12:16:24 UTC | clean up Scipy types & code (#1454) Doc improvement: Fixes some typos in the Scipy docstring and adds a note on scipy minimize()'s callback argument vs GPflow Scipy().minimize()'s step_callback. Cleans up types in the module. Backwards-incompatible change: the `step_callback` that can be passes to the Scipy.minimize() method is changed to take its arguments by position, not name; in line with the StepCallback type signature (and in line with Python's typing.Callable documentation which suggests that callbacks should take arguments preferentially by position, not name). | 02 June 2020, 12:16:24 UTC |
89af61e | st-- | 01 June 2020, 16:12:48 UTC | quickfix to enable GPR to be used with variable data (#1490) GPR used the X.shape attribute instead of calling tf.shape(X); this prevented using it with Variable data, which is now successfully demonstrated in a test. | 01 June 2020, 16:12:48 UTC |
d0c78d0 | joelberkeley-pio | 28 May 2020, 16:04:34 UTC | Allow users to pass an iterable to set_trainable (#1486) | 28 May 2020, 16:04:34 UTC |
3ed381c | st-- | 28 May 2020, 12:25:57 UTC | Improve contributing.md (#1488) * bring contributing.md up to date (resolves #1474) Co-authored-by: joelberkeley-pio <joel.berkeley@prowler.io> | 28 May 2020, 12:25:57 UTC |
d12be33 | joelberkeley-pio | 27 May 2020, 19:30:03 UTC | add type hints: inducing_variables (#1487) | 27 May 2020, 19:30:03 UTC |
1929a36 | st-- | 27 May 2020, 16:39:27 UTC | Makefile quickfix (#1482) Fixes a syntax error in the Makefile introduced by #1471. Also adds a `format-check` target for black --check and a `check-all` target that runs format-check, type-check and the pytest tests. | 27 May 2020, 16:39:27 UTC |
435a7ff | Artem Artemev | 20 May 2020, 13:59:30 UTC | Merge pull request #1481 from GPflow/develop Release 2.0.4 | 20 May 2020, 13:59:30 UTC |
f8676eb | st-- | 20 May 2020, 12:19:40 UTC | bump version to 2.0.4 (#1478) | 20 May 2020, 12:19:40 UTC |
a198764 | joelberkeley-pio | 19 May 2020, 13:50:17 UTC | enable mypy on CI (#1471) | 19 May 2020, 13:50:17 UTC |
61f8d84 | Artem Artemev | 18 May 2020, 20:58:12 UTC | Fix freeze and traverse utility methods (#1476) TensorFlow Probability 0.10 introduced a new _parameters attribute in tfp.bijectors.Bijector instances that contains a self-reference, which broke GPflow's module-traversion utilities (leaf_components, print_summary, deepcopy, freeze). This PR changes traverse_module to ignore the _parameters attribute and proposes a new deepcopy approach that simply uses copy.deepcopy()'s memo argument. Co-authored-by: st-- <st--@users.noreply.github.com> | 18 May 2020, 20:58:12 UTC |
150a0d1 | joelberkeley-pio | 14 May 2020, 13:37:09 UTC | add type hints to gpflow.base (#1427) | 14 May 2020, 13:37:09 UTC |
bf35d66 | Artem Artemev | 13 May 2020, 09:28:43 UTC | Merge pull request #1468 from GPflow/vincent/master_203 Sync develop with master 2.0.3 | 13 May 2020, 09:28:43 UTC |
56c2efe | vdutor | 13 May 2020, 09:05:41 UTC | Merge remote-tracking branch 'origin/develop' into vincent/master_203 | 13 May 2020, 09:05:41 UTC |
a4bfbe6 | Vincent Dutordoir | 13 May 2020, 07:58:09 UTC | Add ipynb to gitignore (#1466) * Add ipynb to gitignore | 13 May 2020, 07:58:09 UTC |
b83f124 | vdutor | 13 May 2020, 07:49:01 UTC | Merge branch 'develop' | 13 May 2020, 07:49:01 UTC |
49ffbcf | vdutor | 13 May 2020, 07:48:48 UTC | Merge branch 'master' into develop | 13 May 2020, 07:48:48 UTC |