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https://github.com/AllenInstitute/ecephys_spike_sorting
04 June 2021, 16:38:47 UTC
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RevisionAuthorDateMessageCommit Date
995842e Josh Siegle19 May 2021, 23:30:17 UTCAdd comma19 May 2021, 23:30:17 UTC
1b9d8a5 Josh Siegle25 March 2021, 00:56:10 UTCMerge pull request #60 from AllenInstitute/ks3 Compatibility with Kilosort325 March 2021, 00:56:10 UTC
f8e1765 Josh Siegle25 March 2021, 00:51:33 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting into ks325 March 2021, 00:51:33 UTC
f1ae0d6 Josh Siegle25 March 2021, 00:50:42 UTCUpdate postprocessing module for KS325 March 2021, 00:50:42 UTC
2117c80 Josh Siegle09 March 2021, 21:48:17 UTCMerge pull request #58 from AllenInstitute/ks3 Updates for Kilosort3 compatibility09 March 2021, 21:48:17 UTC
0c4d082 Josh Siegle09 March 2021, 21:33:44 UTCMinor fixes09 March 2021, 21:33:44 UTC
6d32500 Josh Siegle08 March 2021, 21:54:25 UTCUpdate input JSON generator08 March 2021, 21:54:25 UTC
beb1c91 Josh Siegle08 March 2021, 21:53:31 UTCAdd option to ignore PC-based metrics08 March 2021, 21:53:31 UTC
93195c5 Josh Siegle08 March 2021, 21:49:09 UTCAdd option to sort with KS308 March 2021, 21:49:09 UTC
e960a42 Josh Siegle08 March 2021, 21:42:40 UTCSqueeze channel_map on load08 March 2021, 21:42:40 UTC
3aa6b97 Josh Siegle06 October 2020, 17:45:20 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting06 October 2020, 17:45:20 UTC
d880363 Josh Siegle06 October 2020, 17:45:13 UTCComment out tests until they can be updated06 October 2020, 17:45:13 UTC
f54de18 Josh Siegle06 October 2020, 16:07:25 UTCMerge pull request #53 from mmyros/master Two more checks for PC metrics06 October 2020, 16:07:25 UTC
1a143a6 Josh Siegle06 October 2020, 16:06:46 UTCComment out tests until they can be updated06 October 2020, 16:06:46 UTC
b8c96bb Max Myroshnychenko06 October 2020, 12:57:43 UTCUpdate .travis.yml06 October 2020, 12:57:43 UTC
83f6a32 Max Myroshnychenko06 October 2020, 12:53:42 UTCUpdate .travis.yml06 October 2020, 12:53:42 UTC
6ffeb8e Max Myroshnychenko06 October 2020, 12:29:42 UTCUpdate .travis.yml06 October 2020, 12:29:42 UTC
6e5923f maxym Myroshnychenko06 October 2020, 12:25:25 UTCTwo more checks for PC metrics: Not all labels are this cluster and No fewer than 20 spikes in this cluster06 October 2020, 12:25:25 UTC
37f7c18 Josh Siegle31 August 2020, 21:19:12 UTCAdd NpxExtractor source code + executable31 August 2020, 21:19:12 UTC
d9d041e Josh Siegle11 August 2020, 19:06:48 UTCUpdate L-ratio normalization method11 August 2020, 19:06:48 UTC
ef02966 Josh Siegle11 August 2020, 18:59:37 UTCUpdate Linux makefile11 August 2020, 18:59:37 UTC
4bdd06b Josh Siegle02 July 2020, 21:16:44 UTCMerge pull request #51 from mmyros/master Parallelization using joblib02 July 2020, 21:16:44 UTC
e64749c maxym Myroshnychenko27 June 2020, 01:29:45 UTCjoblib requirement27 June 2020, 01:29:45 UTC
ba1ff07 maxym Myroshnychenko24 June 2020, 16:19:49 UTCFix for silhouette_score indexing24 June 2020, 16:19:49 UTC
09a7f60 maxym Myroshnychenko24 June 2020, 15:20:54 UTCJoblib parallelization of calculate_pc_metrics24 June 2020, 15:20:54 UTC
c5d4b63 maxym Myroshnychenko24 June 2020, 12:57:02 UTCParallel silhouette and drift metrics using joblib24 June 2020, 12:57:02 UTC
8829943 Josh Siegle14 May 2020, 17:32:36 UTCMerge pull request #49 from AllenInstitute/ks1-compatibility Fix PC metrics in cases where spike_templates != spike_clusters14 May 2020, 17:32:36 UTC
f430f28 Josh Siegle14 May 2020, 17:24:40 UTCFix version incompatibility between argschema and marshmallow14 May 2020, 17:24:40 UTC
9d126ca Josh Siegle14 May 2020, 17:16:45 UTCRemove unused pillow dependency14 May 2020, 17:16:45 UTC
55253fd Josh Siegle14 May 2020, 17:13:25 UTCUpdate batch processing script14 May 2020, 17:13:25 UTC
2736fd7 Josh Siegle11 May 2020, 22:49:10 UTCMetrics now work when spike_clusters != spike_templates11 May 2020, 22:49:10 UTC
ddd7602 Josh Siegle06 March 2020, 23:09:41 UTCMerge pull request #48 from DanBenHa/fix_silhouette_score_pc fix PC feature concatenation in silhouette score06 March 2020, 23:09:41 UTC
7d93891 Daniel Hähnke06 March 2020, 08:52:39 UTCfix PC feature concatenation in silhouette score Fixes #4706 March 2020, 08:52:39 UTC
bac23bd Josh Siegle16 January 2020, 23:52:24 UTCRewrite get_unit_pcs method16 January 2020, 23:52:24 UTC
e62b232 Josh Siegle11 January 2020, 01:29:33 UTCUpdate code for case when spike_templates != spike_clusters11 January 2020, 01:29:33 UTC
0643bfd Josh Siegle11 December 2019, 00:12:13 UTCLock marshmallow to v2.19.211 December 2019, 00:12:13 UTC
a073e3b Josh Siegle10 December 2019, 23:59:09 UTCSwitch output to kilosort_output_directory10 December 2019, 23:59:09 UTC
442c00e Josh Siegle10 December 2019, 23:36:26 UTCAdd import to metrics.py10 December 2019, 23:36:26 UTC
fa0dcf7 Josh Siegle09 December 2019, 19:51:16 UTCUpdate noise_templates README09 December 2019, 19:51:16 UTC
c906441 Josh Siegle09 December 2019, 19:25:33 UTCUse pillow version 6.2.0 or higher09 December 2019, 19:25:33 UTC
8cd321f Josh Siegle09 December 2019, 19:21:09 UTCFix bug in silhouette score calculation09 December 2019, 19:21:09 UTC
5d646a9 Josh Siegle24 October 2019, 17:22:17 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting24 October 2019, 17:22:17 UTC
3bce70f Josh Siegle24 October 2019, 17:22:06 UTCEGM edits (to depth_estimation) on NP424 October 2019, 17:22:06 UTC
d0d99ec Josh Siegle17 October 2019, 02:19:36 UTCMerge pull request #43 from mmyros/silhouette_score_fix The variable silhouette_score shadows import17 October 2019, 02:19:36 UTC
c5bd49f max16 October 2019, 19:27:02 UTCThe variable silhouette_score shadows from sklearn.metrics import silhouette_score and causes problems for me. Can we rename it to the_silhouette_score or something similar?16 October 2019, 19:27:02 UTC
f21ecba Josh Siegle27 August 2019, 23:28:41 UTCChange to version 0.227 August 2019, 23:28:41 UTC
79c2598 Josh Siegle26 August 2019, 01:49:30 UTCAdd comma26 August 2019, 01:49:30 UTC
bd62fb5 Josh Siegle26 August 2019, 01:49:04 UTCMove parameters to schema file26 August 2019, 01:49:04 UTC
06b8ea1 Josh Siegle25 August 2019, 23:46:37 UTCAdd template shape check25 August 2019, 23:46:37 UTC
36ea9e8 Josh Siegle25 August 2019, 00:48:57 UTCSet up framework for noise template classifier25 August 2019, 00:48:57 UTC
643e8e5 Josh Siegle21 August 2019, 00:41:57 UTCChange color of asymmetric units21 August 2019, 00:41:57 UTC
97f3177 Josh Siegle21 August 2019, 00:29:22 UTCSave after every update21 August 2019, 00:29:22 UTC
758155a Josh Siegle09 August 2019, 21:36:24 UTCCopy pc_features before changing its size09 August 2019, 21:36:24 UTC
32ff79c Josh Siegle29 July 2019, 22:30:35 UTCupdate categories on template classifier app29 July 2019, 22:30:35 UTC
3855129 Josh Siegle25 July 2019, 19:29:55 UTCUpdate batch plotting25 July 2019, 19:29:55 UTC
a61c708 Josh Siegle11 July 2019, 23:36:26 UTCChange name of metrics output file11 July 2019, 23:36:26 UTC
1787713 Josh Siegle11 July 2019, 23:35:53 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting11 July 2019, 23:35:53 UTC
fbd955e Josh Siegle11 July 2019, 23:35:41 UTCUpdate create_input_json11 July 2019, 23:35:41 UTC
6cd72ff Josh Siegle11 July 2019, 23:34:48 UTCFix PC indexing bug11 July 2019, 23:34:48 UTC
3406ae4 Josh Siegle02 July 2019, 19:06:09 UTCChange spikes per epoch to 1000 for mean waveforms02 July 2019, 19:06:09 UTC
bfee7bc Josh Siegle02 July 2019, 17:51:40 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting02 July 2019, 17:51:40 UTC
f545acf Josh Siegle02 July 2019, 17:51:38 UTCAdd batch processing script02 July 2019, 17:51:38 UTC
8d5dcaa Josh Siegle02 July 2019, 16:12:18 UTCUpdate batch plotting script02 July 2019, 16:12:18 UTC
77ed068 Josh Siegle02 July 2019, 00:26:46 UTCfixed batch_processing conflicts02 July 2019, 00:26:46 UTC
0e234d7 Josh Siegle02 July 2019, 00:20:47 UTCedits to scripts on NP402 July 2019, 00:20:47 UTC
da8eefc Josh Siegle01 July 2019, 22:08:14 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting01 July 2019, 22:08:14 UTC
b5ed6bb Josh Siegle01 July 2019, 22:07:41 UTCUpdate hotkeys for template classifier app01 July 2019, 22:07:41 UTC
e2bf7d0 Josh Siegle28 June 2019, 23:47:55 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting28 June 2019, 23:47:55 UTC
8629d0f Josh Siegle28 June 2019, 23:47:52 UTCAdd batch plotting script28 June 2019, 23:47:52 UTC
9642b82 Josh Siegle28 June 2019, 23:46:45 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting28 June 2019, 23:46:45 UTC
726cc15 Josh Siegle28 June 2019, 23:46:17 UTCChanges on NP.128 June 2019, 23:46:17 UTC
41db3c3 Josh Siegle28 June 2019, 23:42:13 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting28 June 2019, 23:42:13 UTC
a5736b1 Josh Siegle28 June 2019, 23:41:58 UTCUpdates on NP.128 June 2019, 23:41:58 UTC
0ca52b1 Josh Siegle28 June 2019, 23:28:17 UTCUpdate README for quality metrics28 June 2019, 23:28:17 UTC
741e02f Josh Siegle28 June 2019, 23:22:18 UTCUpdate metrics.py28 June 2019, 23:22:18 UTC
fb6b330 Josh Siegle28 June 2019, 21:05:17 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting28 June 2019, 21:05:17 UTC
01ec307 Josh Siegle28 June 2019, 21:05:09 UTCFix typo28 June 2019, 21:05:09 UTC
0fac476 Josh Siegle28 June 2019, 21:00:13 UTCUpdate depth estimation params28 June 2019, 21:00:13 UTC
95fad93 Josh Siegle28 June 2019, 20:56:17 UTCAdd new batch processing script28 June 2019, 20:56:17 UTC
2c6b175 Josh Siegle28 June 2019, 20:42:32 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting28 June 2019, 20:42:32 UTC
db43dfc Josh Siegle28 June 2019, 20:42:29 UTCUpdate create_input_json28 June 2019, 20:42:29 UTC
9061bef Josh Siegle28 June 2019, 20:13:04 UTCAdd initial implementation of drift metrics; closes #3628 June 2019, 20:13:04 UTC
6ce07eb Josh Siegle28 June 2019, 00:20:05 UTCMerge waveform metrics into quality metrics file, if available28 June 2019, 00:20:05 UTC
f2b378a Josh Siegle27 June 2019, 23:00:18 UTCdepth_estimation module runs again27 June 2019, 23:00:18 UTC
e51eb30 Josh Siegle27 June 2019, 22:27:30 UTCFix merge conflict27 June 2019, 22:27:30 UTC
6d9c9de Josh Siegle27 June 2019, 22:26:26 UTCRefactor depth estimation module (untested)27 June 2019, 22:26:26 UTC
f8acb0d Josh Siegle27 June 2019, 20:12:04 UTCAdd check for LFP channel reordering in depth_estimation module27 June 2019, 20:12:04 UTC
b152554 Josh Siegle27 June 2019, 19:37:39 UTCAdd code for full probe t-sne plots27 June 2019, 19:37:39 UTC
0d0b9e5 Josh Siegle27 June 2019, 17:47:29 UTCMake sure plots get closed after saving27 June 2019, 17:47:29 UTC
67a83c6 Josh Siegle27 June 2019, 16:52:40 UTCAdd batch processing file for remote data loading27 June 2019, 16:52:40 UTC
5e0bdb8 Josh Siegle27 June 2019, 16:52:03 UTCUpdate kilosort_helper to work with remote files Now the original data file doesn't have to be local (althoughtemp_wh.dat should be).27 June 2019, 16:52:03 UTC
e1b0eb9 Josh Siegle26 June 2019, 22:10:35 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting26 June 2019, 22:10:35 UTC
3fee8c2 Josh Siegle26 June 2019, 22:09:33 UTCAdd raw data visualization26 June 2019, 22:09:33 UTC
4d64938 Josh Siegle26 June 2019, 20:30:30 UTCAdd ks template plot26 June 2019, 20:30:30 UTC
ec7051e Josh Siegle26 June 2019, 19:04:21 UTCAdd driftmap code26 June 2019, 19:04:21 UTC
9bdc18d Josh Siegle25 June 2019, 22:21:21 UTCMerge pull request #38 from AllenInstitute/37/ks_postprocessing Add spike_templates to load_kilosort_data25 June 2019, 22:21:21 UTC
90eeb60 Josh Siegle25 June 2019, 22:15:31 UTCAdd spike_templates to load_kilosort_data and remove appended _r from kilosort_postprocessing output files25 June 2019, 22:15:31 UTC
080a951 Josh Siegle19 June 2019, 00:47:36 UTCFix typo in batch_processing.py19 June 2019, 00:47:36 UTC
5d96203 Josh Siegle19 June 2019, 00:33:46 UTCRemove local processing file19 June 2019, 00:33:46 UTC
3a03ce1 Josh Siegle19 June 2019, 00:32:45 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting19 June 2019, 00:32:45 UTC
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