| 7979bc3 | Josh Siegle | 26 February 2019, 01:42:21 UTC | Add .mat files to .gitignore | 26 February 2019, 01:42:21 UTC |
| 2b21a5c | Josh Siegle | 26 February 2019, 01:40:45 UTC | Delete chanMap.mat | 26 February 2019, 01:40:45 UTC |
| 4891932 | Josh Siegle | 26 February 2019, 01:40:10 UTC | Changes to NP.1 batch processing scripts | 26 February 2019, 01:40:10 UTC |
| d2031a3 | Josh Siegle | 09 August 2018, 20:58:28 UTC | Fix merge conflict | 09 August 2018, 20:58:28 UTC |
| 4142281 | Josh Siegle | 09 August 2018, 20:56:55 UTC | Changes to processing script | 09 August 2018, 20:56:55 UTC |
| 8dd6e03 | Josh Siegle | 09 August 2018, 20:55:47 UTC | Metrics calculation now runs | 09 August 2018, 20:55:47 UTC |
| 03264f7 | Josh Siegle | 09 August 2018, 20:41:55 UTC | Fix merge conflicts | 09 August 2018, 20:41:55 UTC |
| 9e425f4 | Josh Siegle | 09 August 2018, 20:35:48 UTC | Update batch processing script | 09 August 2018, 20:35:48 UTC |
| e3a844f | jsiegle | 09 August 2018, 20:34:25 UTC | Fix function names in batch processing script | 09 August 2018, 20:34:25 UTC |
| ffc4eab | jsiegle | 09 August 2018, 20:33:01 UTC | Merge branch '16/batch-processing' of https://github.com/alleninstitute/ecephys_spike_sorting into 16/batch-processing | 09 August 2018, 20:33:01 UTC |
| a087f2e | jsiegle | 09 August 2018, 20:32:26 UTC | New method for depth estimation | 09 August 2018, 20:32:26 UTC |
| c25c3db | Josh Siegle | 02 August 2018, 01:31:59 UTC | Fix code for copying to backup drive | 02 August 2018, 01:31:59 UTC |
| b2c5231 | Josh Siegle | 02 August 2018, 01:25:32 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting into 16/batch-processing | 02 August 2018, 01:25:32 UTC |
| c1d3ce8 | Josh Siegle | 02 August 2018, 01:25:26 UTC | Updates on NP.1 | 02 August 2018, 01:25:26 UTC |
| b835594 | Josh Siegle | 02 August 2018, 01:22:51 UTC | Process data on local drive, add copy before sorting | 02 August 2018, 01:22:51 UTC |
| fd3af5d | Josh Siegle | 31 July 2018, 00:27:06 UTC | Delete temp_wh.dat after sorting | 31 July 2018, 00:27:06 UTC |
| 3c5f410 | Josh Siegle | 27 July 2018, 20:16:19 UTC | Fix horizontal + vertical pos calculation | 27 July 2018, 20:16:19 UTC |
| 8d93862 | Josh Siegle | 27 July 2018, 20:11:39 UTC | Fix conflict in batch_processing2.py | 27 July 2018, 20:11:39 UTC |
| 2f6b638 | Josh Siegle | 27 July 2018, 20:10:47 UTC | Updates for serial processing | 27 July 2018, 20:10:47 UTC |
| 0df4e64 | Josh Siegle | 20 July 2018, 18:02:37 UTC | Add kilosort2 master file | 20 July 2018, 18:02:37 UTC |
| d80e520 | Josh Siegle | 20 July 2018, 18:02:09 UTC | Update input json params | 20 July 2018, 18:02:09 UTC |
| 5c65446 | Josh Siegle | 04 July 2018, 22:28:40 UTC | Merge pull request #18 from AllenInstitute/15/kilosort-params 15/kilosort params | 04 July 2018, 22:28:40 UTC |
| 1e4464b | jsiegle | 04 July 2018, 22:24:02 UTC | Remove line from tox.ini that was causing Bamboo to complain | 04 July 2018, 22:24:02 UTC |
| 8439c79 | Josh Siegle | 04 July 2018, 21:30:23 UTC | Add modules back to batch processing script | 04 July 2018, 21:30:23 UTC |
| a91e801 | Josh Siegle | 04 July 2018, 21:27:17 UTC | Move kilosort parameters into schema. Closes #15 | 04 July 2018, 21:27:17 UTC |
| f9c215a | Josh Siegle | 04 July 2018, 21:26:41 UTC | Move kilosort parameters into schema. Closes #15 | 04 July 2018, 21:26:41 UTC |
| fe89420 | Josh Siegle | 04 July 2018, 19:56:30 UTC | Remove hard-coded reference channels | 04 July 2018, 19:56:30 UTC |
| 48e76cd | Josh Siegle | 04 July 2018, 19:45:54 UTC | Update batch processing script | 04 July 2018, 19:45:54 UTC |
| 2b05855 | Josh Siegle | 04 July 2018, 19:07:23 UTC | Merge from GitHub | 04 July 2018, 19:07:23 UTC |
| ef980e2 | Josh Siegle | 04 July 2018, 18:54:33 UTC | Batch processing runs for full pipeline | 04 July 2018, 18:54:33 UTC |
| 41c315e | Josh Siegle | 04 July 2018, 18:06:02 UTC | Allow batch processing in parallel sub-processes | 04 July 2018, 18:06:02 UTC |
| 6796734 | Josh Siegle | 04 July 2018, 02:51:44 UTC | Fix merge conflicts | 04 July 2018, 02:51:44 UTC |
| 53dc28f | Josh Siegle | 04 July 2018, 02:50:20 UTC | Update batch processing script | 04 July 2018, 02:50:20 UTC |
| 291f609 | Josh Siegle | 04 July 2018, 02:49:00 UTC | Add offset subtractiont to mean waveform calculation | 04 July 2018, 02:49:00 UTC |
| 9374449 | Josh Siegle | 04 July 2018, 02:12:33 UTC | Remove obsolete scripts | 04 July 2018, 02:12:33 UTC |
| f2589a2 | Josh Siegle | 04 July 2018, 02:10:46 UTC | Update batch processing script | 04 July 2018, 02:10:46 UTC |
| 61c480d | Josh Siegle | 04 July 2018, 00:52:37 UTC | Fix mean_waveforms and quality_metrics modules | 04 July 2018, 00:52:37 UTC |
| 6193d1a | Josh Siegle | 03 July 2018, 23:50:38 UTC | Add second batch processing script | 03 July 2018, 23:50:38 UTC |
| cfb04c2 | Josh Siegle | 03 July 2018, 21:24:43 UTC | Merge pull request #13 from AllenInstitute/9/create-tests 9/create tests | 03 July 2018, 21:24:43 UTC |
| 8fb7ae9 | jsiegle | 03 July 2018, 19:54:21 UTC | Fix params in depth_estimation | 03 July 2018, 19:54:21 UTC |
| 8894024 | jsiegle | 03 July 2018, 19:45:00 UTC | Add option to output waveforms as .npy file | 03 July 2018, 19:45:00 UTC |
| 97abeb1 | jsiegle | 03 July 2018, 19:43:55 UTC | Add documentation to schemas | 03 July 2018, 19:43:55 UTC |
| 9195580 | jsiegle | 03 July 2018, 19:23:43 UTC | Update README files | 03 July 2018, 19:23:43 UTC |
| 5361197 | jsiegle | 03 July 2018, 19:08:25 UTC | Code cleanup | 03 July 2018, 19:08:25 UTC |
| f45bfec | jsiegle | 03 July 2018, 18:29:54 UTC | Add test-reports folder to .gitignore | 03 July 2018, 18:29:54 UTC |
| d95d0df | jsiegle | 03 July 2018, 18:29:07 UTC | Update spelling of 'Institute' | 03 July 2018, 18:29:07 UTC |
| a064038 | jsiegle | 03 July 2018, 00:12:34 UTC | Fix DATA_DIR in quality metrics test | 03 July 2018, 00:12:34 UTC |
| 4940bf1 | jsiegle | 03 July 2018, 00:04:26 UTC | All tests are passing (with some warnings) | 03 July 2018, 00:04:26 UTC |
| 2c3c0f9 | jsiegle | 02 July 2018, 22:04:42 UTC | Add test for quality metrics | 02 July 2018, 22:04:42 UTC |
| a84be62 | jsiegle | 02 July 2018, 22:04:31 UTC | Add classifier to internal manifest | 02 July 2018, 22:04:31 UTC |
| 6d5e40b | jsiegle | 02 July 2018, 21:55:08 UTC | Merge branch '9/create-tests' of https://github.com/alleninstitute/ecephys_spike_sorting into 9/create-tests | 02 July 2018, 21:55:08 UTC |
| eb1e82f | Josh Siegle | 02 July 2018, 21:52:07 UTC | Add script for batch processing on rig computers | 02 July 2018, 21:52:07 UTC |
| 55a480b | Josh Siegle | 02 July 2018, 21:51:39 UTC | Create new directory if necessary | 02 July 2018, 21:51:39 UTC |
| 1b57eba | Josh Siegle | 02 July 2018, 19:13:37 UTC | Clean up tests | 02 July 2018, 19:13:37 UTC |
| 6614bf5 | Josh Siegle | 02 July 2018, 18:25:56 UTC | Add junit xml to tox file. Closes #12 | 02 July 2018, 18:25:56 UTC |
| ba95407 | jsiegle | 02 July 2018, 02:52:52 UTC | Implement metrics for firing rate, snr, depth, and isi violations | 02 July 2018, 02:52:52 UTC |
| e4bbc04 | Josh Siegle | 02 July 2018, 01:14:44 UTC | Fix issues with noise_templates | 02 July 2018, 01:14:44 UTC |
| 51578e2 | jsiegle | 01 July 2018, 23:55:54 UTC | Calculate waveforms for all clusters (not just good ones) | 01 July 2018, 23:55:54 UTC |
| 73d408b | jsiegle | 01 July 2018, 22:13:35 UTC | Mean waveforms and noise templates run as modules | 01 July 2018, 22:13:35 UTC |
| 0ef036c | jsiegle | 01 July 2018, 20:42:24 UTC | Create RF classifier version of noise_templates module | 01 July 2018, 20:42:24 UTC |
| 3c35846 | Josh Siegle | 30 June 2018, 20:41:14 UTC | First four modules are working | 30 June 2018, 20:41:14 UTC |
| 9de453f | Josh Siegle | 30 June 2018, 19:47:21 UTC | Update README files | 30 June 2018, 19:47:21 UTC |
| 90170e6 | Josh Siegle | 30 June 2018, 19:41:18 UTC | Create test for extract_from_npx | 30 June 2018, 19:41:18 UTC |
| c17a781 | Josh Siegle | 30 June 2018, 19:14:50 UTC | Add settings.xml to cached data manifest | 30 June 2018, 19:14:50 UTC |
| c4bed68 | Josh Siegle | 30 June 2018, 19:05:10 UTC | Create test for depth estimation | 30 June 2018, 19:05:10 UTC |
| ca88b0f | Josh Siegle | 30 June 2018, 18:49:51 UTC | Get tests to run on Windows (messy) | 30 June 2018, 18:49:51 UTC |
| 35f00a8 | jsiegle | 30 June 2018, 05:09:55 UTC | Add test for quality metrics (still not implemented) | 30 June 2018, 05:09:55 UTC |
| 63d7e32 | jsiegle | 30 June 2018, 05:04:09 UTC | Create test for automerging | 30 June 2018, 05:04:09 UTC |
| 92f07df | jsiegle | 30 June 2018, 04:40:05 UTC | Update README for noise_templates module | 30 June 2018, 04:40:05 UTC |
| 4a6f728 | jsiegle | 30 June 2018, 04:37:17 UTC | Create test for noise_templates | 30 June 2018, 04:37:17 UTC |
| d3cd6d6 | jsiegle | 30 June 2018, 04:10:06 UTC | Write test for extract_waveforms | 30 June 2018, 04:10:06 UTC |
| 83616bb | jsiegle | 30 June 2018, 03:53:28 UTC | Write test for extract_waveforms | 30 June 2018, 03:53:28 UTC |
| a84b344 | jsiegle | 30 June 2018, 03:50:24 UTC | Write more tests for utils | 30 June 2018, 03:50:24 UTC |
| 91d805d | jsiegle | 30 June 2018, 03:15:52 UTC | Write more tests for utils | 30 June 2018, 03:15:52 UTC |
| 00eefbe | jsiegle | 30 June 2018, 02:10:09 UTC | Created one real test | 30 June 2018, 02:10:09 UTC |
| 1cadcfe | jsiegle | 30 June 2018, 01:26:09 UTC | Add cluster_group.tsv to internal manifest | 30 June 2018, 01:26:09 UTC |
| e8f6bcc | jsiegle | 30 June 2018, 01:04:04 UTC | Clean up mean waveforms module | 30 June 2018, 01:04:04 UTC |
| eea7d4a | jsiegle | 29 June 2018, 23:11:56 UTC | Add xml > json converter to extract_from_npx | 29 June 2018, 23:11:56 UTC |
| cb2901b | jsiegle | 29 June 2018, 19:32:09 UTC | Update README for npx module | 29 June 2018, 19:32:09 UTC |
| 753bbe2 | jsiegle | 29 June 2018, 19:06:40 UTC | Add README files for each module | 29 June 2018, 19:06:40 UTC |
| fd49915 | jsiegle | 28 June 2018, 18:12:31 UTC | Update pipfile and lock to look for updated cached data service | 28 June 2018, 18:12:31 UTC |
| 46177c5 | jsiegle | 28 June 2018, 03:41:38 UTC | Clean up kilosort_helper | 28 June 2018, 03:41:38 UTC |
| 78caac0 | jsiegle | 28 June 2018, 03:41:21 UTC | Update internal manifest | 28 June 2018, 03:41:21 UTC |
| 3db6578 | jsiegle | 28 June 2018, 03:01:19 UTC | Clean up kilosort_helper (still needs work) | 28 June 2018, 03:01:19 UTC |
| b905dcc | jsiegle | 28 June 2018, 01:22:45 UTC | Clean up params | 28 June 2018, 01:22:45 UTC |
| 34dbc68 | jsiegle | 28 June 2018, 01:17:46 UTC | Remove hard-coded parameters | 28 June 2018, 01:17:46 UTC |
| aa3fd3f | jsiegle | 28 June 2018, 00:40:39 UTC | Implement manifest for cached data | 28 June 2018, 00:40:39 UTC |
| 44363de | jsiegle | 27 June 2018, 23:53:09 UTC | Remove headers | 27 June 2018, 23:53:09 UTC |
| a5ac7dc | jsiegle | 27 June 2018, 23:51:41 UTC | Create helper function for loading kilosort outputs | 27 June 2018, 23:51:41 UTC |
| 0ef8d04 | jsiegle | 27 June 2018, 23:27:05 UTC | Reorganize modules | 27 June 2018, 23:27:05 UTC |
| 3e8c4cb | Josh Siegle | 27 June 2018, 19:24:55 UTC | Add npx extraction back to preprocessing script | 27 June 2018, 19:24:55 UTC |
| b97eaf5 | Josh Siegle | 27 June 2018, 04:22:08 UTC | Add preprocessing script | 27 June 2018, 04:22:08 UTC |
| 06f7c91 | Josh Siegle | 27 June 2018, 04:17:42 UTC | Add tests for quality metrics and mean waveforms | 27 June 2018, 04:17:42 UTC |
| 2584e04 | Josh Siegle | 27 June 2018, 03:44:50 UTC | Add tests for noise templates and automerging | 27 June 2018, 03:44:50 UTC |
| 0720172 | Josh Siegle | 27 June 2018, 01:28:28 UTC | Write test for median subtraction | 27 June 2018, 01:28:28 UTC |
| 3c4edc5 | Josh Siegle | 27 June 2018, 01:16:41 UTC | Add test for depth estimation | 27 June 2018, 01:16:41 UTC |
| 7b5c26a | Josh Siegle | 27 June 2018, 00:46:09 UTC | Add .pytest_cache to .gitignore | 27 June 2018, 00:46:09 UTC |
| 189bf45 | Josh Siegle | 27 June 2018, 00:45:35 UTC | Write test for npx_extractor | 27 June 2018, 00:45:35 UTC |
| 9de3313 | Josh Siegle | 27 June 2018, 00:20:12 UTC | Add test_data to .gitignore | 27 June 2018, 00:20:12 UTC |
| b9f5db5 | Josh Siegle | 27 June 2018, 00:19:24 UTC | Update Pipfile and tox.ini | 27 June 2018, 00:19:24 UTC |
