| 3aa9ade | Josh Siegle | 02 July 2019, 17:26:09 UTC | Add parallel metrics calculation module | 02 July 2019, 17:26:09 UTC |
| 8c5c660 | Josh Siegle | 29 June 2019, 20:58:03 UTC | Compute for all clusters | 29 June 2019, 20:58:03 UTC |
| bb7faff | Josh Siegle | 29 June 2019, 20:57:08 UTC | Use multiprocessing to calculate quality metrics | 29 June 2019, 20:57:08 UTC |
| 94fe5d0 | Josh Siegle | 29 June 2019, 20:49:17 UTC | Use multiprocessing to calculate quality metrics | 29 June 2019, 20:49:17 UTC |
| 16064a5 | Josh Siegle | 29 June 2019, 04:44:40 UTC | Calculate quality metrics in parallel | 29 June 2019, 04:44:40 UTC |
| 0ca52b1 | Josh Siegle | 28 June 2019, 23:28:17 UTC | Update README for quality metrics | 28 June 2019, 23:28:17 UTC |
| 741e02f | Josh Siegle | 28 June 2019, 23:22:18 UTC | Update metrics.py | 28 June 2019, 23:22:18 UTC |
| fb6b330 | Josh Siegle | 28 June 2019, 21:05:17 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 28 June 2019, 21:05:17 UTC |
| 01ec307 | Josh Siegle | 28 June 2019, 21:05:09 UTC | Fix typo | 28 June 2019, 21:05:09 UTC |
| 0fac476 | Josh Siegle | 28 June 2019, 21:00:13 UTC | Update depth estimation params | 28 June 2019, 21:00:13 UTC |
| 95fad93 | Josh Siegle | 28 June 2019, 20:56:17 UTC | Add new batch processing script | 28 June 2019, 20:56:17 UTC |
| 2c6b175 | Josh Siegle | 28 June 2019, 20:42:32 UTC | Merge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting | 28 June 2019, 20:42:32 UTC |
| db43dfc | Josh Siegle | 28 June 2019, 20:42:29 UTC | Update create_input_json | 28 June 2019, 20:42:29 UTC |
| 9061bef | Josh Siegle | 28 June 2019, 20:13:04 UTC | Add initial implementation of drift metrics; closes #36 | 28 June 2019, 20:13:04 UTC |
| 6ce07eb | Josh Siegle | 28 June 2019, 00:20:05 UTC | Merge waveform metrics into quality metrics file, if available | 28 June 2019, 00:20:05 UTC |
| f2b378a | Josh Siegle | 27 June 2019, 23:00:18 UTC | depth_estimation module runs again | 27 June 2019, 23:00:18 UTC |
| e51eb30 | Josh Siegle | 27 June 2019, 22:27:30 UTC | Fix merge conflict | 27 June 2019, 22:27:30 UTC |
| 6d9c9de | Josh Siegle | 27 June 2019, 22:26:26 UTC | Refactor depth estimation module (untested) | 27 June 2019, 22:26:26 UTC |
| f8acb0d | Josh Siegle | 27 June 2019, 20:12:04 UTC | Add check for LFP channel reordering in depth_estimation module | 27 June 2019, 20:12:04 UTC |
| b152554 | Josh Siegle | 27 June 2019, 19:37:39 UTC | Add code for full probe t-sne plots | 27 June 2019, 19:37:39 UTC |
| 0d0b9e5 | Josh Siegle | 27 June 2019, 17:47:29 UTC | Make sure plots get closed after saving | 27 June 2019, 17:47:29 UTC |
| 67a83c6 | Josh Siegle | 27 June 2019, 16:52:40 UTC | Add batch processing file for remote data loading | 27 June 2019, 16:52:40 UTC |
| 5e0bdb8 | Josh Siegle | 27 June 2019, 16:52:03 UTC | Update kilosort_helper to work with remote files Now the original data file doesn't have to be local (althoughtemp_wh.dat should be). | 27 June 2019, 16:52:03 UTC |
| e1b0eb9 | Josh Siegle | 26 June 2019, 22:10:35 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 26 June 2019, 22:10:35 UTC |
| 3fee8c2 | Josh Siegle | 26 June 2019, 22:09:33 UTC | Add raw data visualization | 26 June 2019, 22:09:33 UTC |
| 4d64938 | Josh Siegle | 26 June 2019, 20:30:30 UTC | Add ks template plot | 26 June 2019, 20:30:30 UTC |
| ec7051e | Josh Siegle | 26 June 2019, 19:04:21 UTC | Add driftmap code | 26 June 2019, 19:04:21 UTC |
| 9bdc18d | Josh Siegle | 25 June 2019, 22:21:21 UTC | Merge pull request #38 from AllenInstitute/37/ks_postprocessing Add spike_templates to load_kilosort_data | 25 June 2019, 22:21:21 UTC |
| 90eeb60 | Josh Siegle | 25 June 2019, 22:15:31 UTC | Add spike_templates to load_kilosort_data and remove appended _r from kilosort_postprocessing output files | 25 June 2019, 22:15:31 UTC |
| 080a951 | Josh Siegle | 19 June 2019, 00:47:36 UTC | Fix typo in batch_processing.py | 19 June 2019, 00:47:36 UTC |
| 5d96203 | Josh Siegle | 19 June 2019, 00:33:46 UTC | Remove local processing file | 19 June 2019, 00:33:46 UTC |
| 3a03ce1 | Josh Siegle | 19 June 2019, 00:32:45 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 19 June 2019, 00:32:45 UTC |
| 2c4929a | Josh Siegle | 19 June 2019, 00:31:52 UTC | Merge branch '35/waveform_test' | 19 June 2019, 00:31:52 UTC |
| f48187b | Josh Siegle | 12 June 2019, 21:42:28 UTC | Use local peak instead of peak channel when extracting 1D waveform | 12 June 2019, 21:42:28 UTC |
| 7520740 | Josh Siegle | 12 June 2019, 21:22:10 UTC | Add minimum urllib3 and requests requirements to pipfile | 12 June 2019, 21:22:10 UTC |
| 7605433 | Josh Siegle | 12 June 2019, 17:05:45 UTC | Add 'max_chan' variable | 12 June 2019, 17:05:45 UTC |
| 00266ea | Josh Siegle | 12 June 2019, 16:53:30 UTC | Update 2D waveform calculation | 12 June 2019, 16:53:30 UTC |
| 3ebea39 | Josh Siegle | 10 June 2019, 19:41:44 UTC | Add warning supression | 10 June 2019, 19:41:44 UTC |
| a1967d6 | Josh Siegle | 06 June 2019, 19:40:11 UTC | Update README.md | 06 June 2019, 19:40:11 UTC |
| 5854bf1 | Josh Siegle | 06 June 2019, 19:14:45 UTC | Merge branch '35/waveform_test' of https://github.com/alleninstitute/ecephys_spike_sorting into 35/waveform_test | 06 June 2019, 19:14:45 UTC |
| d992e13 | Josh Siegle | 06 June 2019, 19:14:23 UTC | Restrict 2d waveform calculation only to available channels | 06 June 2019, 19:14:23 UTC |
| 5f0052c | Xiaoxuan Jia | 04 June 2019, 21:15:15 UTC | corrected bug created by detecting peak before trough in the waveform duration | 04 June 2019, 21:15:15 UTC |
| ab6f49d | Xiaoxuan Jia | 04 June 2019, 20:54:39 UTC | match upsampling_factor for comparison with results in the paper | 04 June 2019, 20:54:39 UTC |
| 4853536 | Josh Siegle | 04 June 2019, 20:16:33 UTC | Merge branch 'master' into 35/waveform_test | 04 June 2019, 20:16:33 UTC |
| eda29ac | Josh Siegle | 04 June 2019, 20:14:38 UTC | Fix timestamp calculation | 04 June 2019, 20:14:38 UTC |
| e157470 | Xiaoxuan Jia | 04 June 2019, 17:32:05 UTC | #35 initial | 04 June 2019, 17:32:05 UTC |
| 45f4acb | Josh Siegle | 03 June 2019, 23:18:37 UTC | Add note on non-Python dependencies | 03 June 2019, 23:18:37 UTC |
| 6733e4e | Josh Siegle | 03 June 2019, 22:58:06 UTC | Update README | 03 June 2019, 22:58:06 UTC |
| 548610b | Josh Siegle | 03 June 2019, 22:57:15 UTC | Add macOS instructions to scripts README | 03 June 2019, 22:57:15 UTC |
| 8ae924a | Josh Siegle | 03 June 2019, 22:54:39 UTC | Add homebrew note to README | 03 June 2019, 22:54:39 UTC |
| c5d93a8 | Josh Siegle | 03 June 2019, 22:52:04 UTC | Add Mac instructions for README | 03 June 2019, 22:52:04 UTC |
| 157575d | Josh Siegle | 03 June 2019, 22:48:48 UTC | Remove 's' from key; closes #32 | 03 June 2019, 22:48:48 UTC |
| 3287b63 | Josh Siegle | 03 June 2019, 17:20:27 UTC | Update documentation | 03 June 2019, 17:20:27 UTC |
| 89132de | Josh Siegle | 02 June 2019, 00:02:03 UTC | Update documentation | 02 June 2019, 00:02:03 UTC |
| 6f7835c | Josh Siegle | 01 June 2019, 22:33:40 UTC | Update README files | 01 June 2019, 22:33:40 UTC |
| 137bd96 | Josh Siegle | 01 June 2019, 22:26:16 UTC | Add documentation for batch processing scripts | 01 June 2019, 22:26:16 UTC |
| 6ec03bb | Josh Siegle | 01 June 2019, 21:30:21 UTC | Update documentation | 01 June 2019, 21:30:21 UTC |
| a9e1b0a | Josh Siegle | 01 June 2019, 21:04:06 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 01 June 2019, 21:04:06 UTC |
| 4ef1381 | Josh Siegle | 01 June 2019, 21:03:58 UTC | Update README | 01 June 2019, 21:03:58 UTC |
| 1fdba99 | Josh Siegle | 01 June 2019, 05:14:11 UTC | Update README files | 01 June 2019, 05:14:11 UTC |
| 03b07aa | Josh Siegle | 01 June 2019, 01:45:26 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 01 June 2019, 01:45:26 UTC |
| 798cf7f | Josh Siegle | 01 June 2019, 01:40:56 UTC | Clean up kilosort_helper | 01 June 2019, 01:40:56 UTC |
| 2a5a81e | Josh Siegle | 01 June 2019, 01:20:41 UTC | Add copyright to README | 01 June 2019, 01:20:41 UTC |
| 1cdd0eb | Josh Siegle | 01 June 2019, 01:18:38 UTC | Update batch processing script | 01 June 2019, 01:18:38 UTC |
| 5fc383d | Josh Siegle | 01 June 2019, 01:18:15 UTC | Major refactor: clean up input json | 01 June 2019, 01:18:15 UTC |
| d1991c1 | Josh Siegle | 31 May 2019, 23:13:37 UTC | Merge from origin/master | 31 May 2019, 23:13:37 UTC |
| 5949c08 | Josh Siegle | 31 May 2019, 23:04:51 UTC | Remove entry points from README | 31 May 2019, 23:04:51 UTC |
| d2717ac | Josh Siegle | 31 May 2019, 23:03:04 UTC | Change size of probe_depth.png | 31 May 2019, 23:03:04 UTC |
| 18ab0d4 | Josh Siegle | 31 May 2019, 23:02:26 UTC | Change size of probe_depth.png | 31 May 2019, 23:02:26 UTC |
| 03e7dc9 | Josh Siegle | 31 May 2019, 23:02:06 UTC | Change size of probe_depth.png | 31 May 2019, 23:02:06 UTC |
| a99534c | Josh Siegle | 31 May 2019, 23:01:43 UTC | Change size of probe_depth.png | 31 May 2019, 23:01:43 UTC |
| a855dff | Josh Siegle | 31 May 2019, 23:01:19 UTC | Change size of probe_depth.png | 31 May 2019, 23:01:19 UTC |
| eff0186 | Josh Siegle | 31 May 2019, 23:00:43 UTC | Change size of probe_depth.png | 31 May 2019, 23:00:43 UTC |
| 2143cb4 | Josh Siegle | 31 May 2019, 22:59:42 UTC | Update probe_depth image | 31 May 2019, 22:59:42 UTC |
| 759e360 | Josh Siegle | 31 May 2019, 22:18:16 UTC | Update __main__ files | 31 May 2019, 22:18:16 UTC |
| 92ab6bb | Josh Siegle | 31 May 2019, 20:50:57 UTC | Update README | 31 May 2019, 20:50:57 UTC |
| 3f1ffde | Josh Siegle | 31 May 2019, 20:48:16 UTC | Update Update batch processing script | 31 May 2019, 20:48:16 UTC |
| fc786c4 | Josh Siegle | 31 May 2019, 20:43:10 UTC | Add Windows documentation | 31 May 2019, 20:43:10 UTC |
| 5ae4522 | Josh Siegle | 31 May 2019, 19:56:38 UTC | Edit waveform images | 31 May 2019, 19:56:38 UTC |
| 87e0681 | Josh Siegle | 31 May 2019, 19:30:38 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 31 May 2019, 19:30:38 UTC |
| 4a3760c | Josh Siegle | 31 May 2019, 19:30:25 UTC | Update README | 31 May 2019, 19:30:25 UTC |
| 3fbd063 | Josh Siegle | 31 May 2019, 19:19:35 UTC | Add console progress bar | 31 May 2019, 19:19:35 UTC |
| 9bbf697 | Josh Siegle | 31 May 2019, 18:28:08 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 31 May 2019, 18:28:08 UTC |
| 5058e5e | Josh Siegle | 31 May 2019, 18:26:10 UTC | Make icon smaller | 31 May 2019, 18:26:10 UTC |
| 0a918ed | Josh Siegle | 31 May 2019, 18:25:10 UTC | Add icon to README | 31 May 2019, 18:25:10 UTC |
| e9cd5d2 | Josh Siegle | 31 May 2019, 18:23:20 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 31 May 2019, 18:23:20 UTC |
| 153cac2 | Josh Siegle | 31 May 2019, 18:23:14 UTC | Update README files | 31 May 2019, 18:23:14 UTC |
| 350bb8b | Josh Siegle | 31 May 2019, 18:19:52 UTC | Add icon file | 31 May 2019, 18:19:52 UTC |
| 75a9b06 | Josh Siegle | 31 May 2019, 03:06:27 UTC | Add whitespace to README | 31 May 2019, 03:06:27 UTC |
| 4dd6222 | Josh Siegle | 31 May 2019, 03:03:55 UTC | Remove extra .gitignore | 31 May 2019, 03:03:55 UTC |
| df04678 | Josh Siegle | 31 May 2019, 03:02:07 UTC | Add median subtraction C++ source code | 31 May 2019, 03:02:07 UTC |
| 33d041d | Josh Siegle | 31 May 2019, 02:55:19 UTC | Add depth estimation image | 31 May 2019, 02:55:19 UTC |
| b6c7b48 | Josh Siegle | 31 May 2019, 02:30:34 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 31 May 2019, 02:30:34 UTC |
| 6137a19 | Josh Siegle | 31 May 2019, 02:30:28 UTC | Update README | 31 May 2019, 02:30:28 UTC |
| f2d02aa | Josh Siegle | 31 May 2019, 02:21:11 UTC | Make icons even smaller | 31 May 2019, 02:21:11 UTC |
| 14af8e6 | Josh Siegle | 31 May 2019, 02:14:55 UTC | Add .DS_Store to .gitignore | 31 May 2019, 02:14:55 UTC |
| 58bc685 | Josh Siegle | 31 May 2019, 02:14:18 UTC | Reduce image size | 31 May 2019, 02:14:18 UTC |
| c331d1c | Josh Siegle | 31 May 2019, 02:10:20 UTC | Add images for quality metrics | 31 May 2019, 02:10:20 UTC |
| 8fd643e | Josh Siegle | 31 May 2019, 01:24:39 UTC | Update README | 31 May 2019, 01:24:39 UTC |
| ffb622a | Josh Siegle | 31 May 2019, 01:22:50 UTC | Add images to README | 31 May 2019, 01:22:50 UTC |
