swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">KWUtil.hxx</div> </div>
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<div class="contents">
<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">//</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// KWUtil.hxx</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// TomatoLib</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">//</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Created by Konrad Werys on 12/8/16.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// Copyright © 2016 Konrad Werys. All rights reserved.</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">//</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#ifndef KWUtil_hxx</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor"></span><span class="preprocessor">#define KWUtil_hxx</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">//#include "KWUtil.h"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> </div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">/* copyArrayToArray */</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> </div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE1, <span class="keyword">typename</span> TYPE2 ></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="keywordtype">void</span> KWUtil::copyArrayToArray(<span class="keywordtype">int</span> nSamples, TYPE1 *arrayTo, <span class="keyword">const</span> TYPE2 *arrayFrom){</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  <span class="keywordflow">if</span> (arrayFrom == NULL){</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  arrayTo = NULL;</div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  }</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> </div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++)</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  arrayTo[i] = (TYPE1)arrayFrom[i];</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> }</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">/* printVector */</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="keyword">template</span><<span class="keyword">typename</span> TYPE></div>
<div class="line"><a name="l00035"></a><span class="lineno"><a class="line" href="class_k_w_util.html#acc956bb7cbedc39fbca11a6414b66dac"> 35</a></span> <span class="keywordtype">void</span> <a class="code" href="class_k_w_util.html#acc956bb7cbedc39fbca11a6414b66dac">KWUtil::printVector</a>(<span class="keyword">const</span> std::string& name, <span class="keyword">const</span> std::vector<TYPE> vector){</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  std::cout << name << <span class="stringliteral">" "</span>;</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < vector.size(); ++i){</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  std::cout << <span class="stringliteral">" "</span> << vector.at(i);</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  }</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  std::cout << std::endl;</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> }</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">template</span><<span class="keyword">typename</span> TYPE></div>
<div class="line"><a name="l00044"></a><span class="lineno"><a class="line" href="class_k_w_util.html#aec00dd2420ac8d850284db70c71c1c16"> 44</a></span> <span class="keywordtype">void</span> <a class="code" href="class_k_w_util.html#aec00dd2420ac8d850284db70c71c1c16">KWUtil::printVectorNewline</a>(<span class="keyword">const</span> std::string &name, <span class="keyword">const</span> std::vector<TYPE> vector){</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  std::cout << name << std::endl;</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < vector.size(); ++i){</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  std::cout << <span class="stringliteral">" "</span> << vector.at(i) << std::endl;</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  }</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> }</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="comment">/* printArray 1D */</span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="keywordtype">void</span> KWUtil::printArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray){</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i=0; i<nSamples; i++){</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  std::cout << myarray[i] << <span class="stringliteral">" "</span>;</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  }</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> }</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="keywordtype">void</span> KWUtil::printArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray, <span class="keywordtype">int</span> width){</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i=0; i<nSamples; i++){</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  std::cout << std::setw(width) << myarray[i] << <span class="stringliteral">" "</span>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  }</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> }</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="keywordtype">void</span> KWUtil::printArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray, <span class="keywordtype">char</span>* text){</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  std::cout << text;</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  printArray(nSamples, myarray);</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> }</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="keywordtype">void</span> KWUtil::printArray(<span class="keywordtype">bool</span> doPrint, <span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray){</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keywordflow">if</span>(doPrint) printArray(nSamples, myarray);</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> }</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> </div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="keywordtype">void</span> KWUtil::printArray(<span class="keywordtype">bool</span> doPrint, <span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray, <span class="keywordtype">char</span>* text){</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="keywordflow">if</span>(doPrint) printArray(nSamples, myarray, text);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> }</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> <span class="comment">/* printArray 2D */</span></div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="keywordtype">void</span> KWUtil::printArray2D(<span class="keywordtype">int</span> nRows, <span class="keywordtype">int</span> nCols, TYPE **myarray){</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i = 0; i < nRows; i++){</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> j = 0; j < nCols; j++)</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  std::cout << myarray[i][j] << <span class="stringliteral">"\t"</span>;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  std::cout << std::endl;</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  }</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  std::cout << std::endl;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span> }</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> <span class="keywordtype">void</span> KWUtil::printArray2D(<span class="keywordtype">int</span> nRows, <span class="keywordtype">int</span> nCols, TYPE **myarray, <span class="keywordtype">char</span> * text){</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  std::cout << text;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  printArray2D(nRows, nCols, myarray);</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> }</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> <span class="keywordtype">void</span> KWUtil::printArray2D(<span class="keywordtype">bool</span> doPrint, <span class="keywordtype">int</span> nRows, <span class="keywordtype">int</span> nCols, TYPE **myarray){</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="keywordflow">if</span>(doPrint) printArray2D(nRows, nCols, myarray);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> }</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> <span class="keywordtype">void</span> KWUtil::printArray2D(<span class="keywordtype">bool</span> doPrint, <span class="keywordtype">int</span> nRows, <span class="keywordtype">int</span> nCols, TYPE **myarray, <span class="keywordtype">char</span> * text){</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keywordflow">if</span>(doPrint) printArray2D(nRows, nCols, myarray, text);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> }</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> </div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> <span class="keywordtype">void</span> KWUtil::printStdVector(<span class="keyword">const</span> std::vector<TYPE> myvector){</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="keywordtype">int</span> nSamples = myvector.size();</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  KWUtil::printArray(nSamples, &myvector[0]);</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> }</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> <span class="keywordtype">void</span> KWUtil::printStdVector(<span class="keyword">const</span> std::vector<TYPE> myvector, <span class="keywordtype">char</span>* text){</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordtype">int</span> nSamples = myvector.size();</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  KWUtil::printArray(nSamples, &myvector[0], text);</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> }</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> <span class="keywordtype">void</span> KWUtil::printStdVector(<span class="keywordtype">bool</span> doPrint, <span class="keyword">const</span> std::vector<TYPE> myvector){</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="keywordtype">int</span> nSamples = myvector.size();</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  KWUtil::printArray(doPrint, nSamples, &myvector[0]);</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> }</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> <span class="keywordtype">void</span> KWUtil::printStdVector(<span class="keywordtype">bool</span> doPrint, <span class="keyword">const</span> std::vector<TYPE> myvector, <span class="keywordtype">char</span>* text){</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="keywordtype">int</span> nSamples = myvector.size();</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  KWUtil::printArray(doPrint, nSamples, &myvector[0], text);</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> }</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> </div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> <span class="comment">/* calculations */</span></div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span> <span class="comment">/***********************/</span></div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> <span class="keywordtype">void</span> KWUtil::swap(TYPE &a, TYPE &b){</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  TYPE temp = a;</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  a = b;</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  b = temp;</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> }</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> </div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> TYPE KWUtil::max(TYPE a, TYPE b){</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <span class="keywordflow">return</span> (a > b) ? a : b;</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> }</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span> </div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> TYPE KWUtil::min(TYPE a, TYPE b){</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <span class="keywordflow">return</span> (a < b) ? a : b;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span> }</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> </div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> TYPE KWUtil::calcSumArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray){</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  TYPE sum = TYPE(); <span class="comment">// 0</span></div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="keywordflow">for</span>(<span class="keywordtype">long</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  sum+= myarray[i];</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  }</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordflow">return</span> sum;</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> }</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span> </div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> <span class="keywordtype">double</span> KWUtil::calcMeanArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray){</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keywordflow">if</span> (nSamples == 0)</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordflow">return</span> 0.0;</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> (nSamples == 1)</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordflow">return</span> myarray[0];</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="keywordflow">return</span> (calcSumArray(nSamples,myarray)/nSamples);</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> }</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> <span class="keywordtype">double</span> KWUtil::calcMedianArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray){</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keywordflow">if</span> (nSamples == 0){</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordflow">return</span> 0.0;</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (nSamples == 1){</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <span class="keywordflow">return</span> myarray[0];</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  TYPE *sortedArray = <span class="keyword">new</span> TYPE[nSamples];</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  KWUtil::copyArrayToArray(nSamples, sortedArray, myarray);</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  KWUtil::quickSort(nSamples, sortedArray);</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordtype">double</span> result;</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordflow">if</span>(nSamples % 2) {</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <span class="comment">// if odd number of samples, return the middle</span></div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  result = sortedArray[(nSamples - 1) / 2];</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <span class="comment">// if even number of samples, return mean of the two in the middle</span></div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keywordtype">int</span> pos = nSamples/2-1;</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  result = (sortedArray[pos] + sortedArray[pos+1]) / 2;</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  }</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keyword">delete</span>[] sortedArray;</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="keywordflow">return</span> result;</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  }</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span> }</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span> </div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span> <span class="keywordtype">double</span> KWUtil::calcStandardDeviationArray(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray) {</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="keywordflow">if</span> (nSamples < 2) {</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keywordflow">return</span> 0.0;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  TYPE mymean = KWUtil::calcMeanArray(nSamples, myarray);</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  TYPE sum = 0.0;</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < nSamples; ++i){</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  sum = sum + (myarray[i] - mymean) * (myarray[i] - mymean);</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  }</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="keywordflow">return</span> (sqrt(sum)/(nSamples-1));</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  }</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span> }</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span> <span class="comment">// calculate R square confidence map</span></div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span> <span class="keywordtype">double</span> KWUtil::calcR2ss(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *fitted, <span class="keyword">const</span> TYPE *ysignal){</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="comment">// equation taken from wikipedia https://en.wikipedia.org/wiki/Coefficient_of_determination</span></div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  TYPE meanYsignal = TYPE(); <span class="comment">// 0</span></div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  TYPE SStot = TYPE(); <span class="comment">// 0</span></div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  TYPE SSres = TYPE(); <span class="comment">// 0</span></div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span> </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  meanYsignal = meanYsignal + ysignal[i];</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  }</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  meanYsignal = meanYsignal/nSamples;</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  SStot = SStot + (ysignal[i] - meanYsignal)*(ysignal[i] - meanYsignal);</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  }</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  SSres = SSres + (ysignal[i] - fitted[i])*(ysignal[i] - fitted[i]);</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  }</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordflow">if</span> (SStot == 0)</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  <span class="keywordflow">return</span> 0.0;</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  <span class="keywordflow">return</span> 1-SSres/SStot;</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> }</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> </div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span> <span class="comment">// calculate R square confidence map</span></div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span> <span class="keywordtype">double</span> KWUtil::calcR2cor(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *fitted, <span class="keyword">const</span> TYPE *ysignal){</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="comment">// calculated from squared pearson correlation coefficient</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="comment">// R2 = (covYF / (stdY*stdF))^2 = covYF^2 / (std2Y * std2F)</span></div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="comment">// covYF = sum((y-meany)(calcCostValue-meanf))/N</span></div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="comment">// stdY = sqrt(sum((y-meany)/N)</span></div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <span class="comment">// std2Y = sum((y-meany)/N</span></div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="comment">// Ns are reduced, so not used in this calculations</span></div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> </div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  TYPE meanY = 0, meanF = 0, sumYY = 0, sumFF = 0, covYF = 0; <span class="comment">//xf =sum((y-meany)(calcCostValue-meanf))</span></div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  meanY = meanY + ysignal[i];</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  meanF = meanF + fitted[i];</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  }</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  meanY = meanY/nSamples;</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  meanF = meanF/nSamples;</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  sumYY = sumYY + (ysignal[i] - meanY)*(ysignal[i] - meanY);</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  sumFF = sumFF + (fitted[i] - meanF)*(fitted[i] - meanF);</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  covYF = covYF + (ysignal[i] - meanY)*(fitted[i] - meanF);</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  }</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <span class="keywordflow">if</span> ((sumYY == 0) || (sumFF == 0))</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="keywordflow">return</span> 0.0;</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordflow">return</span> covYF*covYF/(sumYY*sumFF);</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span> }</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span> <span class="keywordtype">double</span> KWUtil::SKPLinReg(<span class="keyword">const</span> TYPE *datax, <span class="keyword">const</span> TYPE *datay, <span class="keywordtype">int</span> nSamples, TYPE &rslope, TYPE &roffset){</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="comment">// sets slope and offset and returns pearson's R between two vectors [0:n-1] elements each.</span></div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  TYPE yt, xt, syy = 0.0, sxy = 0.0, sxx = 0.0, ay = 0.0, ax = 0.0;</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="keywordflow">if</span>(nSamples<2) <span class="keywordflow">return</span>(0.0); <span class="comment">// sanity check</span></div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keywordflow">for</span> (<span class="keywordtype">long</span> j = 0; j < nSamples; j++) <span class="comment">// caclualte means</span></div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  ax += datax[j];</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  ay += datay[j];</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  }</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  ax /= nSamples;</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  ay /= nSamples;</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <span class="keywordflow">for</span> (<span class="keywordtype">long</span> j = 0; j < nSamples; j++)</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  {</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  xt = datax[j]-ax;</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  yt = datay[j]-ay;</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  sxx += xt*xt;</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  syy += yt*yt;</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  sxy += xt*yt;</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  }</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <span class="comment">// error return in case no adequate diviation</span></div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <span class="keywordflow">if</span> (sxx*syy <=0)</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  {</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  rslope = 0.0;</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  roffset = ay;</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <span class="keywordflow">return</span>(0);</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  }</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="comment">// else normal return</span></div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  rslope = sxy/sxx;</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  roffset = ay-rslope*ax;</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  <span class="keywordflow">return</span> (sxy/sqrt(sxx*syy)); <span class="comment">// correlation = (sxy/sqrt(sxx*syy)</span></div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span> } <span class="comment">//double SKPLinReg(double *x,double *y, int n, double &rslope, double &roffset)</span></div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span> <span class="keywordtype">void</span> KWUtil::SKPsort(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> TYPE *myarray, <span class="keywordtype">int</span> *index){</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <span class="comment">// sorts array [1..nSamples+1] :/</span></div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordtype">int</span> l,j,ir,indxt,i;</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  <span class="keywordtype">double</span> q;</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="keywordflow">for</span> (j=1;j<=nSamples;j++) index[j]=j;</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  <span class="keywordflow">if</span> (nSamples == 1) <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  l=(nSamples >> 1) + 1;</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  ir=nSamples;</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <span class="keywordflow">for</span> (;;)</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  {</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <span class="keywordflow">if</span> (l > 1)</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  q=myarray[(indxt=index[--l])];</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  q=myarray[(indxt=index[ir])];</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  index[ir]=index[1];</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  <span class="keywordflow">if</span> (--ir == 1) {</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  index[1]=indxt;</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  }</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  }</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  i=l;</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  j=l << 1;</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  <span class="keywordflow">while</span> (j <= ir) {</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <span class="keywordflow">if</span> (j < ir && myarray[index[j]] < myarray[index[j+1]]) j++;</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keywordflow">if</span> (q < myarray[index[j]]) {</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  index[i]=index[j];</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  j += (i=j);</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  }</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="keywordflow">else</span> j=ir+1;</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  }</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  index[i]=indxt;</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  }</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span> }</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span> </div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> <span class="keywordtype">void</span> KWUtil::quickSort(<span class="keywordtype">int</span> nSamples, TYPE *myarray){</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  KWUtil::quickSort(myarray, 0, nSamples-1);</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> }</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span> </div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span> <span class="keywordtype">void</span> KWUtil::quickSortIndex(<span class="keywordtype">int</span> nSamples, TYPE *myarray, <span class="keywordtype">int</span> *indexArray){</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < nSamples; i++){</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  indexArray[i] = i;</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  }</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  KWUtil::quickSortIndex(myarray, indexArray, 0, nSamples-1);</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span> }</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span> </div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span> <span class="comment">// private</span></div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span> <span class="keywordtype">void</span> KWUtil::quickSort(TYPE arr[], <span class="keywordtype">int</span> left, <span class="keywordtype">int</span> right) {</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  <span class="comment">// http://www.algolist.net/Algorithms/Sorting/Quicksort</span></div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <span class="keywordtype">int</span> i = left, j = right;</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  TYPE tmp;</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  TYPE pivot = arr[(left + right) / 2];</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span> </div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="comment">/* partition */</span></div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordflow">while</span> (i <= j) {</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <span class="keywordflow">while</span> (arr[i] < pivot)</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  i++;</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <span class="keywordflow">while</span> (arr[j] > pivot)</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  j--;</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <span class="keywordflow">if</span> (i <= j) {</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  tmp = arr[i];</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  arr[i] = arr[j];</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  arr[j] = tmp;</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  i++;</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  j--;</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  }</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  };</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span> </div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  <span class="comment">/* recursion */</span></div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="keywordflow">if</span> (left < j)</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  quickSort(arr, left, j);</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <span class="keywordflow">if</span> (i < right)</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  quickSort(arr, i, right);</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> }</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span> </div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span> <span class="keywordtype">void</span> KWUtil::quickSortIndex(TYPE arr[], <span class="keywordtype">int</span> indexArr[], <span class="keywordtype">int</span> left, <span class="keywordtype">int</span> right) {</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  <span class="comment">// http://www.algolist.net/Algorithms/Sorting/Quicksort</span></div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  <span class="keywordtype">int</span> i = left, j = right, tmpIdx;</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  TYPE tmp;</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  TYPE pivot = arr[(left + right) / 2];</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span> </div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  <span class="comment">/* partition */</span></div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="keywordflow">while</span> (i <= j) {</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  <span class="keywordflow">while</span> (arr[i] < pivot)</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  i++;</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keywordflow">while</span> (arr[j] > pivot)</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  j--;</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <span class="keywordflow">if</span> (i <= j) {</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <span class="comment">// array</span></div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  tmp = arr[i];</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  arr[i] = arr[j];</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  arr[j] = tmp;</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  <span class="comment">// indexArray</span></div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  tmpIdx = indexArr[i];</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  indexArr[i] = indexArr[j];</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  indexArr[j] = tmpIdx;</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  i++;</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  j--;</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  }</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  };</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span> </div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  <span class="comment">/* recursion */</span></div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  <span class="keywordflow">if</span> (left < j)</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  quickSortIndex(arr, indexArr, left, j);</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <span class="keywordflow">if</span> (i < right)</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  quickSortIndex(arr, indexArr, i, right);</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span> }</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span> </div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span> <span class="keywordtype">void</span> KWUtil::printKW(<span class="keywordtype">bool</span> doPrint, <span class="keywordtype">char</span>* fmt, ...){</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  <span class="keywordflow">if</span> (doPrint){</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  va_list args;</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  va_start(args,fmt);</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  vprintf(fmt,args);</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  va_end(args);</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  }</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span> }</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span> </div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00426"></a><span class="lineno"><a class="line" href="class_k_w_util.html#a80504801c382f1ac367bcf0787fb18c2"> 426</a></span> <span class="keywordtype">int</span> <a class="code" href="class_k_w_util.html#a80504801c382f1ac367bcf0787fb18c2">KWUtil::calcMatrixInverse3x3</a>(<span class="keyword">const</span> TYPE *matrix, TYPE *matrixInverse){</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> </div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < 9; ++i){</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  matrixInverse[i] = 0;</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  }</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span> </div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  <span class="keyword">const</span> TYPE *a = matrix; <span class="comment">// just for shorter equations</span></div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  TYPE det = a[0]*a[4]*a[8] - a[0]*a[5]*a[7] - a[1]*a[3]*a[8] + a[1]*a[5]*a[6] + a[2]*a[3]*a[7] - a[2]*a[4]*a[6];</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span> </div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="keywordflow">if</span> (fabs(det) < std::numeric_limits<TYPE>::min())</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <span class="keywordflow">return</span> 1; <span class="comment">// EXIT_FAILURE</span></div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span> </div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  matrixInverse[0] = (a[4]*a[8] - a[5]*a[7])/det;</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  matrixInverse[1] = -(a[1]*a[8] - a[2]*a[7])/det;</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  matrixInverse[2] = (a[1]*a[5] - a[2]*a[4])/det;</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  matrixInverse[3] = -(a[3]*a[8] - a[5]*a[6])/det;</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  matrixInverse[4] = (a[0]*a[8] - a[2]*a[6])/det;</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  matrixInverse[5] = -(a[0]*a[5] - a[2]*a[3])/det;</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  matrixInverse[6] = (a[3]*a[7] - a[4]*a[6])/det;</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  matrixInverse[7] = -(a[0]*a[7] - a[1]*a[6])/det;</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  matrixInverse[8] = (a[0]*a[4] - a[1]*a[3])/det;</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span> </div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  <span class="keywordflow">return</span> 0; <span class="comment">// EXIT_SUCCESS</span></div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span> }</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span> </div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span> TYPE KWUtil::getChiSqrt(TYPE lastFValue, <span class="keywordtype">int</span> nSamples){</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <span class="keywordflow">return</span> sqrt(lastFValue/(nSamples-1));</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> }</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span> </div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span> TYPE KWUtil::MOLLI_min(TYPE a[], <span class="keywordtype">int</span> n, <span class="keywordtype">int</span> *indm)</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span> {</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  <span class="keywordtype">int</span> i=0;</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  <span class="keywordtype">short</span> mval=a[0];</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  *indm=0;</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  <span class="keywordflow">for</span> (i=0;i<n;i++)if(mval>a[i]){*indm=i;mval=a[i];};</div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  <span class="keywordflow">return</span>(mval);</div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span> }</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span> </div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span> TYPE KWUtil::MOLLI_max(TYPE a[], <span class="keywordtype">int</span> n, <span class="keywordtype">int</span> *indm)</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span> {</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="keywordtype">int</span> i=0;</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  <span class="keywordtype">short</span> mval=a[0];</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  *indm=0;</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keywordflow">for</span> (i=0;i<n;i++)<span class="keywordflow">if</span>(mval<a[i]){*indm=i;mval=a[i];};</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  <span class="keywordflow">return</span>(mval);</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span> }</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span> </div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span> <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span> TYPE KWUtil::dicomTime2Seconds(std::string dicomTimeString){</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  TYPE dicomTimeSeconds = 0;</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span> </div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  <span class="keywordflow">if</span> (dicomTimeString.length() < 1) {</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  <span class="comment">// printf("ERROR: Dicom string should not be empty");</span></div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  <span class="keywordflow">return</span> dicomTimeSeconds; <span class="comment">// return 0</span></div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  }</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span> </div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  <span class="keywordflow">if</span> (dicomTimeString.length() != 6 && dicomTimeString[6] != <span class="charliteral">'.'</span>){</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  printf(<span class="stringliteral">"ERROR: Dicom string should have a dot at the sixth index"</span>);</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  <span class="keywordflow">return</span> dicomTimeSeconds; <span class="comment">// return 0</span></div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  }</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span> </div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  std::string hours = dicomTimeString.substr(0,2);</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  std::string minutes = dicomTimeString.substr(2,2);</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  std::string seconds = dicomTimeString.substr(4,2);</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  std::string milliseconds = <span class="stringliteral">"0"</span>;</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <span class="keywordflow">if</span> (dicomTimeString.length() > 6) {</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  milliseconds = dicomTimeString.substr(6, dicomTimeString.length()-6);</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  }</div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span> </div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  TYPE hoursInSeconds = 60 * 60 * KWUtil::StringToNumber<TYPE>(hours);</div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  TYPE minutesInSeconds = 60 * KWUtil::StringToNumber<TYPE>(minutes);</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  TYPE secondsInSeconds = 1 *KWUtil::StringToNumber<TYPE>(seconds);</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  TYPE millisecondsInSeconds = KWUtil::StringToNumber<TYPE>(milliseconds);</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span> </div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  dicomTimeSeconds = hoursInSeconds + minutesInSeconds + secondsInSeconds + millisecondsInSeconds;</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span> </div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  <span class="keywordflow">return</span> dicomTimeSeconds;</div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span> }</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span> </div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span> <span class="comment">// for threading</span></div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span> <span class="comment">// from https://solarianprogrammer.com/2012/02/27/cpp-11-thread-tutorial-part-2/</span></div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span> <span class="keyword">template</span> < <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span> std::vector<int> KWUtil::bounds(<span class="keywordtype">int</span> parts, <span class="keywordtype">int</span> mem) {</div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  std::vector<int>bnd;</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  <span class="keywordtype">int</span> delta = mem / parts;</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="keywordtype">int</span> reminder = mem % parts;</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <span class="keywordtype">int</span> N1 = 0, N2 = 0;</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  bnd.push_back(N1);</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < parts; ++i) {</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  N2 = N1 + delta;</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  <span class="keywordflow">if</span> (i == parts - 1)</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  N2 += reminder;</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  bnd.push_back(N2);</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  N1 = N2;</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  }</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  <span class="keywordflow">return</span> bnd;</div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span> }</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span> </div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span> <span class="preprocessor">#endif</span></div>
<div class="ttc" id="class_k_w_util_html_aec00dd2420ac8d850284db70c71c1c16"><div class="ttname"><a href="class_k_w_util.html#aec00dd2420ac8d850284db70c71c1c16">KWUtil::printVectorNewline</a></div><div class="ttdeci">static void printVectorNewline(const std::string &name, const std::vector< TYPE > vector)</div><div class="ttdef"><b>Definition:</b> KWUtil.hxx:44</div></div>
<div class="ttc" id="class_k_w_util_html_acc956bb7cbedc39fbca11a6414b66dac"><div class="ttname"><a href="class_k_w_util.html#acc956bb7cbedc39fbca11a6414b66dac">KWUtil::printVector</a></div><div class="ttdeci">static void printVector(const std::string &name, const std::vector< TYPE > vector)</div><div class="ttdef"><b>Definition:</b> KWUtil.hxx:35</div></div>
<div class="ttc" id="class_k_w_util_html_a80504801c382f1ac367bcf0787fb18c2"><div class="ttname"><a href="class_k_w_util.html#a80504801c382f1ac367bcf0787fb18c2">KWUtil::calcMatrixInverse3x3</a></div><div class="ttdeci">static int calcMatrixInverse3x3(const TYPE *matrix, TYPE *matrixInverse)</div><div class="ttdef"><b>Definition:</b> KWUtil.hxx:426</div></div>
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