swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">OxOriginalShmolliDicomReader.h</div> </div>
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<a href="_ox_original_shmolli_dicom_reader_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef Tomato_OxOriginalShmolliDicomReader_H</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define Tomato_OxOriginalShmolliDicomReader_H</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include "tomatolib_export.h"</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> </div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include "itkReadFileListFilter.h"</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "itkSortInvTimesImageFilter.h"</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "itkExtractImageFilter.h"</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> </div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="keyword">namespace </span>Ox {</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="keyword">class </span>OriginalShmolliDicomReader {</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="comment">// typedefs primitive data types</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="keyword">typedef</span> MeasureType InputPixelType;</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="keyword">typedef</span> MeasureType OutputPixelType;</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> </div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="comment">// typedefs image data types</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keyword">typedef</span> itk::Image<InputPixelType, 3> Image3dType;</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keyword">typedef</span> itk::Image<OutputPixelType, 2> Image2dType;</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keyword">typedef</span> itk::ReadFileListFilter<Image3dType> ReadFileListFilterType;</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keyword">typedef</span> itk::SortInvTimesImageFilter<Image3dType, Image3dType> SortInvTimesImageFilterType;</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="comment">// member variables</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  InputPixelType *_invTimes;</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  InputPixelType *_echoTimes;</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keywordtype">int</span> _nSamples;</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keyword">typename</span> Image3dType::Pointer _imageMag;</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">typename</span> Image3dType::Pointer _imagePha;</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageT1grey;</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageT1color;</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageR2;</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageA;</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageB;</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageT1star;</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageNShmolliSamplesUsed;</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageChiSqrt;</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="keyword">typename</span> Image2dType::Pointer _imageSnr;</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  std::vector<std::string> _filesMag;</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  std::vector<std::string> _filesPha;</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  std::vector<std::string> _filesT1;</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  std::vector<std::string> _filesFitparams;</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keywordtype">int</span> readAndSort();</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> </div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keywordtype">int</span> copyFromImage(MeasureType* array, <span class="keyword">const</span> <span class="keyword">typename</span> Image3dType::Pointer image, <span class="keyword">const</span> <span class="keyword">typename</span> Image3dType::IndexType index);</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  OriginalShmolliDicomReader(){</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  _invTimes = 0;</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  _echoTimes = 0;</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  _nSamples = 0;</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  _imageMag = 0;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  _imagePha = 0;</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  _imageT1grey = 0;</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  _imageT1color = 0;</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  _imageA = 0;</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  _imageB = 0;</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  _imageT1star = 0;</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  _imageNShmolliSamplesUsed = 0;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  _imageChiSqrt = 0;</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  _imageSnr = 0;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  };</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <span class="keyword">virtual</span> ~OriginalShmolliDicomReader(){</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="keyword">delete</span> [] _invTimes;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  };</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  };</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span> } <span class="comment">// namespace Ox</span></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> <span class="preprocessor">#ifndef TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> <span class="preprocessor"></span><span class="preprocessor">#include "<a class="code" href="_ox_original_shmolli_dicom_reader_8hxx.html">OxOriginalShmolliDicomReader.hxx</a>"</span></div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span> <span class="preprocessor">#endif //TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="preprocessor">#endif //Tomato_OxOriginalShmolliDicomReader_H</span></div>
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