swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">OxStartPointCalculator.h</div> </div>
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<div class="contents">
<a href="_ox_start_point_calculator_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef Tomato_OXSTARTPOINTCALCULATOR_H</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define Tomato_OXSTARTPOINTCALCULATOR_H</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "KWUtil.h"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> </div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="keyword">namespace </span>Ox {</div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> </div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00021"></a><span class="lineno"><a class="line" href="class_ox_1_1_start_point_calculator.html"> 21</a></span>  <span class="keyword">class </span><a class="code" href="class_ox_1_1_start_point_calculator.html">StartPointCalculator</a>{</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="class_ox_1_1_start_point_calculator.html#a9d1132410d68eb16f3f71ec4015c0b2f">calculateStartPoint</a>() = 0;</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="comment">// getters</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keyword">const</span> MeasureType *getInputStartPoint()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keywordflow">return</span> _InputStartPoint;</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  }</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  MeasureType *getCalculatedStartPoint()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordflow">if</span> (!_CalculatedStartPoint) <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"_CalculatedStartPoint equals 0. Set _CalculatedStartPoint"</span>);</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordflow">return</span> _CalculatedStartPoint;</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  }</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keywordtype">int</span> getNDims()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> _nDims; }</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="comment">//setters</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setInputStartPoint(<span class="keyword">const</span> MeasureType *_InputStartPoint) {</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keywordflow">if</span> (_nDimsChanged){</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="keyword">delete</span>[] this->_InputStartPoint;</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  this->_InputStartPoint = <span class="keyword">new</span> MeasureType[this->_nDims];</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  _nDimsChanged = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  }</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keywordflow">if</span> (!_InputStartPoint) {</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  this->_InputStartPoint = <span class="keyword">new</span> MeasureType[this->_nDims];</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  }</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < this->getNDims(); i++){</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  StartPointCalculator::_InputStartPoint[i] = _InputStartPoint[i];</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  }</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  }</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setNDims(<span class="keywordtype">int</span> _nDims) {</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keywordflow">if</span> (StartPointCalculator::_nDims != _nDims) {</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  StartPointCalculator::_nDims = _nDims;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  _nDimsChanged = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  }</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  }</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setInvTimes(<span class="keyword">const</span> MeasureType *_InvTimes) { StartPointCalculator::_InvTimes = _InvTimes; }</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setEchoTimes(<span class="keyword">const</span> MeasureType *_EchoTimes) { StartPointCalculator::_EchoTimes = _EchoTimes; }</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setSigMag(<span class="keyword">const</span> MeasureType *_SigMag) { StartPointCalculator::_SigMag = _SigMag; }</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setSigns(<span class="keyword">const</span> MeasureType *_Signs) { StartPointCalculator::_Signs = _Signs; }</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setCalculatedStartPoint(MeasureType *_CalculatedStartPoint) { StartPointCalculator::_CalculatedStartPoint = _CalculatedStartPoint; }</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> setNSamples(<span class="keywordtype">int</span> _nSamples) { StartPointCalculator::_nSamples = _nSamples; }</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> </div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keywordtype">void</span> disp(){</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  std::cout << <span class="stringliteral">"\nYou called disp() on a StartPointCalculator object "</span> << <span class="keyword">this</span></div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  << <span class="stringliteral">" with nSamples: "</span> << _nSamples</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  << <span class="stringliteral">" nDims: "</span> << _nDims;</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  KWUtil::printArray(_InvTimes != 0, _nSamples, _InvTimes, (<span class="keywordtype">char</span>*)<span class="stringliteral">"\nInvTimes: "</span>);</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  KWUtil::printArray(_EchoTimes != 0, _nSamples, _InvTimes, (<span class="keywordtype">char</span>*)<span class="stringliteral">"\nEchoTimes: "</span>);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  KWUtil::printArray(_SigMag != 0, _nSamples, _SigMag, (<span class="keywordtype">char</span>*)<span class="stringliteral">"\nSigMag: "</span>);</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  KWUtil::printArray(_Signs != 0, _nSamples, _Signs, (<span class="keywordtype">char</span>*)<span class="stringliteral">"\nSigns: "</span>);</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  KWUtil::printArray(_nDims, this->getCalculatedStartPoint(), (<span class="keywordtype">char</span>*)<span class="stringliteral">"\nStart point: "</span>);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  }</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="class_ox_1_1_start_point_calculator.html#a00a48e8845623b57e414380924a3f82b"> 91</a></span>  <span class="keywordtype">void</span> <a class="code" href="class_ox_1_1_start_point_calculator.html#a00a48e8845623b57e414380924a3f82b">setAllPointersToNull</a>(){</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  _InputStartPoint = 0;</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  _CalculatedStartPoint = 0;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  _InvTimes = 0;</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  _EchoTimes = 0;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  _SigMag = 0;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  _Signs = 0;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  }</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="class_ox_1_1_start_point_calculator.html#a408ce85b6fbf0ee69f4eca3176b814d6"> 103</a></span>  <a class="code" href="class_ox_1_1_start_point_calculator.html#a408ce85b6fbf0ee69f4eca3176b814d6">StartPointCalculator</a>(){</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <a class="code" href="class_ox_1_1_start_point_calculator.html#a00a48e8845623b57e414380924a3f82b">setAllPointersToNull</a>();</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  _nSamples = 0;</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  _nDims = 0;</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  _nDimsChanged = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  }</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00115"></a><span class="lineno"><a class="line" href="class_ox_1_1_start_point_calculator.html#ab6b12ed8fa6b47b3335b5c7a92b94623"> 115</a></span>  <a class="code" href="class_ox_1_1_start_point_calculator.html#ab6b12ed8fa6b47b3335b5c7a92b94623">StartPointCalculator</a>(<span class="keyword">const</span> <a class="code" href="class_ox_1_1_start_point_calculator.html">StartPointCalculator</a> &old){</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> </div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <a class="code" href="class_ox_1_1_start_point_calculator.html#a00a48e8845623b57e414380924a3f82b">setAllPointersToNull</a>();</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  _nSamples = old._nSamples;</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  _nDims = old._nDims;</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  _nDimsChanged = old._nDimsChanged;</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  };</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="keyword">virtual</span> <a class="code" href="class_ox_1_1_start_point_calculator.html">StartPointCalculator<MeasureType></a> *<a class="code" href="class_ox_1_1_start_point_calculator.html#acd2a221872002157f232e1e7f73a1859">newByCloning</a>() = 0;</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="class_ox_1_1_start_point_calculator.html#a210c3312a8926b750dba8e498c6b620a"> 134</a></span>  <span class="keyword">virtual</span> <a class="code" href="class_ox_1_1_start_point_calculator.html#a210c3312a8926b750dba8e498c6b620a">~StartPointCalculator</a>(){</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <span class="keyword">delete</span> [] this->_InputStartPoint;</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  };</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  MeasureType* _InputStartPoint;</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  MeasureType* _CalculatedStartPoint;</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="keyword">const</span> MeasureType* _InvTimes;</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="keyword">const</span> MeasureType* _EchoTimes;</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="keyword">const</span> MeasureType* _SigMag;</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <span class="keyword">const</span> MeasureType* _Signs;</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keywordtype">int</span> _nSamples;</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keywordtype">int</span> _nDims; <span class="comment">// special ShMOLLI parameter</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> </div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordtype">bool</span> _nDimsChanged;</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  };</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> } <span class="comment">//namespace Ox</span></div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> </div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span> <span class="preprocessor">#endif //Tomato_OXSTARTPOINTCALCULATOR_H</span></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_a00a48e8845623b57e414380924a3f82b"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#a00a48e8845623b57e414380924a3f82b">Ox::StartPointCalculator::setAllPointersToNull</a></div><div class="ttdeci">void setAllPointersToNull()</div><div class="ttdoc">set all the pointers to zero </div><div class="ttdef"><b>Definition:</b> OxStartPointCalculator.h:91</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_ab6b12ed8fa6b47b3335b5c7a92b94623"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#ab6b12ed8fa6b47b3335b5c7a92b94623">Ox::StartPointCalculator::StartPointCalculator</a></div><div class="ttdeci">StartPointCalculator(const StartPointCalculator &old)</div><div class="ttdoc">copy constructor </div><div class="ttdef"><b>Definition:</b> OxStartPointCalculator.h:115</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_a210c3312a8926b750dba8e498c6b620a"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#a210c3312a8926b750dba8e498c6b620a">Ox::StartPointCalculator::~StartPointCalculator</a></div><div class="ttdeci">virtual ~StartPointCalculator()</div><div class="ttdoc">do not forget about the virtual destructor, see https://stackoverflow.com/questions/461203/when-to-us...</div><div class="ttdef"><b>Definition:</b> OxStartPointCalculator.h:134</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_acd2a221872002157f232e1e7f73a1859"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#acd2a221872002157f232e1e7f73a1859">Ox::StartPointCalculator::newByCloning</a></div><div class="ttdeci">virtual StartPointCalculator< MeasureType > * newByCloning()=0</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html">Ox::StartPointCalculator</a></div><div class="ttdef"><b>Definition:</b> OxStartPointCalculator.h:21</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_a408ce85b6fbf0ee69f4eca3176b814d6"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#a408ce85b6fbf0ee69f4eca3176b814d6">Ox::StartPointCalculator::StartPointCalculator</a></div><div class="ttdeci">StartPointCalculator()</div><div class="ttdoc">constructor </div><div class="ttdef"><b>Definition:</b> OxStartPointCalculator.h:103</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_a9d1132410d68eb16f3f71ec4015c0b2f"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#a9d1132410d68eb16f3f71ec4015c0b2f">Ox::StartPointCalculator::calculateStartPoint</a></div><div class="ttdeci">virtual int calculateStartPoint()=0</div></div>
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