swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">Tomato.hxx</div> </div>
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<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef Tomato_Tomato_HXX</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define Tomato_Tomato_HXX</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">namespace </span>Ox {</div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> </div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span>  Tomato<MeasureType></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span>  ::Tomato(std::string inputFileName){</div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> </div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span>  _nSamples = 0;</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span>  _invTimes = 0; <span class="comment">// nullptr</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  _echoTimes = 0; <span class="comment">// nullptr</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  _opts = <span class="keyword">new</span> TomatoOptions<InputPixelType>(inputFileName);</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  _imageCalculatorItk = CalculatorT1ImageFilterType::New();</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="comment">//_sorterMag = SortInvTimesImageFilterType::New();</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="comment">//_sorterPha = SortInvTimesImageFilterType::New();</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  }</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> </div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  Tomato<MeasureType></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  ::~Tomato(){</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keyword">delete</span> _opts;</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keyword">delete</span> [] _invTimes;</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keyword">delete</span> [] _echoTimes;</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  }</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordtype">int</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  Tomato<MeasureType></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  ::readAndSort(){</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keyword">typename</span> ReadFileListFilterType::Pointer readerMag = ReadFileListFilterType::New();</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  readerMag->SetFileList(_opts->files_magnitude);</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  readerMag->SetDirName(_opts->dir_magnitude);</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  readerMag->Update();</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="comment">// have we read magnitudes?</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keywordflow">if</span> (readerMag->GetInvTimes().empty()){</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"\nNo magnitude images read, check the paths!"</span>);</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  }</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keywordflow">if</span> (_opts->files_magnitude.empty()){</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  _opts->files_magnitude = readerMag->GetFileList();</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  }</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keyword">typename</span> SortInvTimesImageFilterType::Pointer sorterMag = SortInvTimesImageFilterType::New();</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  sorterMag->SetInvTimesNonSorted(readerMag->GetInvTimes());</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  sorterMag->SetEchoTimesNonSorted(readerMag->GetEchoTimes());</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  sorterMag->SetInput(readerMag->GetOutput());</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keywordflow">if</span> (_opts->parameter_type == T1) {</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  sorterMag->SortByInvTimes();</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (_opts->parameter_type == T2){</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  sorterMag->SortByEchoTimes();</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  }</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  sorterMag->Update();</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="keyword">typename</span> ReadFileListFilterType::Pointer readerPha = ReadFileListFilterType::New();</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  readerPha->SetFileList(_opts->files_phase);</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  readerPha->SetDirName(_opts->dir_phase);</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  readerPha->Update();</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="comment">// is phase empty?</span></div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keywordflow">if</span> (readerPha->GetInvTimes().empty()) {</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keywordflow">if</span> (_opts->sign_calc_method != NoSign){</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  std::cerr << <span class="stringliteral">"\nNo phase images read, setting the sign_calc_method to NoSign"</span> << std::endl;</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  _opts->sign_calc_method = NoSign;</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  }</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  }</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> </div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keywordflow">if</span> (_opts->files_phase.empty()){</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  _opts->files_phase = readerPha->GetFileList();</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  }</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> </div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">typename</span> SortInvTimesImageFilterType::Pointer sorterPha = SortInvTimesImageFilterType::New();</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keywordflow">if</span> (_opts->sign_calc_method != NoSign) {</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  sorterPha->SetInvTimesNonSorted(readerPha->GetInvTimes());</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  sorterPha->SetEchoTimesNonSorted(readerMag->GetEchoTimes());</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  sorterPha->SetInput(readerPha->GetOutput());</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="keywordflow">if</span> (_opts->parameter_type == T1) {</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  sorterPha->SortByInvTimes();</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (_opts->parameter_type == T2){</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  sorterPha->SortByEchoTimes();</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  }</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  sorterPha->Update();</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  }</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <span class="comment">// are the inversion times in magnitude and phase series equal?</span></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="keywordflow">if</span> (_opts->sign_calc_method != NoSign) {</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <span class="keywordflow">if</span> (sorterMag->GetInvTimesSorted() != sorterPha->GetInvTimesSorted()) {</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"\nMag and Pha inv times are not equal"</span>);</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  }</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  }</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  vnl_vector<InputPixelType > tempInv = sorterMag->GetInvTimesSorted();</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  _nSamples = (int)tempInv.size();</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  _invTimes = <span class="keyword">new</span> InputPixelType[_nSamples];</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  KWUtil::copyArrayToArray(_nSamples, _invTimes, tempInv.data_block());</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="keywordflow">if</span> (_opts->inversion_times.empty()){</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  _opts->inversion_times = std::vector<InputPixelType >(tempInv.begin(), tempInv.end());</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  }</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> </div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  vnl_vector<InputPixelType > tempEcho = sorterMag->GetEchoTimesSorted();</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  _nSamples = (int)tempEcho.size();</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  _echoTimes = <span class="keyword">new</span> InputPixelType[_nSamples];</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  KWUtil::copyArrayToArray(_nSamples, _echoTimes, tempEcho.data_block());</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> </div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="keywordflow">if</span> (_opts->echo_times.empty()){</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  _opts->echo_times = std::vector<InputPixelType >(tempEcho.begin(), tempEcho.end());</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  }</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  _dictionaryInput = readerMag->GetDicomIO()->GetMetaDataDictionary();</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  _imageMag = sorterMag->GetOutput();</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordflow">if</span> (_opts->sign_calc_method != NoSign) {</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  _imagePha = sorterPha->GetOutput();</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  }</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="keywordflow">return</span> 0; <span class="comment">// EXIT_SUCCESS</span></div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  }</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span> </div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keywordtype">int</span></div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  Tomato<MeasureType></div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  ::calculate() {</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> </div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="comment">// alloc and init</span></div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  Calculator<InputPixelType> *calculator = FactoryOfCalculators<InputPixelType>::newByFactory(_opts);</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  Model<InputPixelType> *model = FactoryOfModels<InputPixelType>::newByFactory(_opts);</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  Fitter<InputPixelType> *fitter = FactoryOfFitters<InputPixelType>::newByFactory(_opts);</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  SignCalculator<InputPixelType> *signCalculator = FactoryOfSignCalculators<InputPixelType>::newByFactory(_opts);</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  StartPointCalculator<InputPixelType> *startPointCalculator = FactoryOfStartPointCalculators<InputPixelType>::newByFactory(_opts);</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span> </div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="comment">// configure calculator</span></div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  calculator->setModel(model);</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  calculator->setFitter(fitter);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  calculator->setSignCalculator(signCalculator);</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  calculator->setStartPointCalculator(startPointCalculator);</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  calculator->setInvTimes(_invTimes);</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  calculator->setEchoTimes(_echoTimes);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordflow">if</span> (_opts->noise.size() > 0){</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  calculator->setNoise(&(_opts->noise)[0]);</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  }</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  calculator->setNSamples(_nSamples);</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> </div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <span class="comment">// configure calculator itk filter</span></div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="comment">//CalculatorT1ImageFilterType::Pointer _imageCalculatorItk = CalculatorT1ImageFilterType::New();</span></div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="comment">//_imageCalculatorItk = CalculatorT1ImageFilterType::New();</span></div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  _imageCalculatorItk->SetInputMagImage(_imageMag);</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  _imageCalculatorItk->SetInputPhaImage(_imagePha);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <span class="keywordflow">if</span> (_opts->number_of_threads > 0)</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  _imageCalculatorItk->SetNumberOfThreads(_opts->number_of_threads);</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  _imageCalculatorItk->SetCalculator(calculator);</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="comment">// calculations</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  itk::TimeProbe clock;</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  clock.Start();</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  _imageCalculatorItk->Update();</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  } <span class="keywordflow">catch</span>( itk::ExceptionObject & err ) {</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  std::cerr << <span class="stringliteral">"ExceptionObject caught !"</span> << std::endl;</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  std::cerr << err << std::endl;</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  }</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  clock.Stop();</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  _opts->calculation_time = clock.GetTotal();</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  printf(<span class="stringliteral">"Calculation time: %.4fs.\n"</span>, clock.GetTotal());</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> </div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="keyword">delete</span> model;</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keyword">delete</span> fitter;</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="keyword">delete</span> signCalculator;</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <span class="keyword">delete</span> startPointCalculator;</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keyword">delete</span> calculator;</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span> </div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordflow">return</span> 0; <span class="comment">// EXIT_SUCCESS</span></div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  }</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span> </div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <span class="keywordtype">int</span></div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  Tomato<MeasureType></div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  ::exportToDicom(){</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordflow">if</span> (_opts->parameter_type == Ox::T1){</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordflow">return</span> exportT1ToDicom();</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  }</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> (_opts->parameter_type == Ox::T2){</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="keywordflow">return</span> exportT2ToDicom();</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  }</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  std::cerr << <span class="stringliteral">"Tomato::exportToDicom: Export has not been implemented"</span> << std::endl;</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  <span class="keywordflow">return</span> 0; <span class="comment">// EXIT_FAILURE</span></div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  }</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  }</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> </div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> IType, <span class="keyword">typename</span> EType ></div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="keyword">class </span>CastPixelAccessor</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  {</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keyword">typedef</span> IType InternalType;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <span class="keyword">typedef</span> EType ExternalType;</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keyword">static</span> <span class="keywordtype">void</span> Set(InternalType & output, <span class="keyword">const</span> ExternalType & input)</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  {</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  output = <span class="keyword">static_cast<</span>InternalType<span class="keyword">></span>( input );</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  }</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span> </div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="keyword">static</span> ExternalType Get( <span class="keyword">const</span> InternalType & input )</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  {</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <span class="keywordflow">return</span> <span class="keyword">static_cast<</span>ExternalType<span class="keyword">></span>( input );</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  }</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  };</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span> </div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span> } <span class="comment">// namespace Ox</span></div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span> </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span> <span class="preprocessor">#endif //Tomato_Tomato_H</span></div>
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