swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">Tomato_exportT1.hxx</div> </div>
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<a href="_tomato__export_t1_8hxx.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef Tomato_Tomato_EXPORT_HXX</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define Tomato_Tomato_EXPORT_HXX</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "gdcmUIDGenerator.h"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include "itkGDCMImageIO.h"</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include "itkGDCMSeriesFileNames.h"</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "itkMultiplyImageFilter.h"</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "itkImageFileWriter.h"</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "itkFileTools.h"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "itkAdaptImageFilter.h"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">namespace </span>Ox {</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> </div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="keywordtype">int</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  Tomato<MeasureType></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  ::exportT1ToDicom(){</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="keywordflow">if</span> (_opts->dir_output_map.empty()){</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  printf(<span class="stringliteral">"No DICOM export, dir_output_map not given.\n"</span>);</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keywordflow">return</span> EXIT_FAILURE;</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  }</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="comment">// OxColorbarImageFilter</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keyword">typedef</span> itk::Colorbar2DImageFilter< ImageType2D > OxColorbarImageFilterType;</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keyword">typename</span> OxColorbarImageFilterType::Pointer OxColorbarFilter = OxColorbarImageFilterType::New();</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  OxColorbarFilter->SetInput(_imageCalculatorItk->GetT1Image());</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  OxColorbarFilter->SetAddColorbar(_opts->use_colorbar);</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="comment">// get the dictionary ready before export</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="comment">//typedef itk::MetaDataDictionary DictionaryType;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="comment">//DictionaryType & _dictionaryInput = reader->GetDicomIO()->GetMetaDataDictionary();</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="comment">// T1 map with color</span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  DictionaryType dictionaryOutput_T1Color(_dictionaryInput);</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="comment">// UIDs</span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  gdcm::UIDGenerator sopuid;</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  std::string sopInstanceUID_T1Color = sopuid.Generate();</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  gdcm::UIDGenerator suid;</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  std::string seriesUID_T1 = suid.Generate();</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="comment">// seriesNumber</span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  std::string seriesNumber;</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  itk::ExposeMetaData<std::string>(_dictionaryInput, <span class="stringliteral">"0020|0011"</span>, seriesNumber);</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="keywordflow">if</span> (_opts->output_map_series_number == 0) {</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  _opts->output_map_series_number = KWUtil::StringToNumber<int>(seriesNumber) + 10002;</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  }</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  std::string newSeriesNumber_T1 = KWUtil::NumberToString(_opts->output_map_series_number);</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> </div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="comment">// dicom tags dependent on the MagneticFieldStrength</span></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  std::string MagneticFieldStrength;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  itk::ExposeMetaData<std::string>(_dictionaryInput, <span class="stringliteral">"0018|0087"</span>, MagneticFieldStrength);</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  std::string ImageCommentsT1mapWithColormap, clutRedString, clutGreenString, clutBlueString;</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="keywordflow">if</span> (MagneticFieldStrength.find(<span class="stringliteral">"1.5"</span>) != std::string::npos){</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  ImageCommentsT1mapWithColormap = ImageCommentsT1mapWithColormap.append(<span class="stringliteral">"ShMOLLI color 980SD265ms"</span>);</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  clutRedString = getEncodedSting(getShmolliColormapRed15TArray());</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  clutGreenString = getEncodedSting(getShmolliColormapGreen15TArray());</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  clutBlueString = getEncodedSting(getShmolliColormapBlue15TArray());</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  printf(<span class="stringliteral">"Colormap for MagneticFieldStrength 1.5T is used.\n"</span>);</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (MagneticFieldStrength.find(<span class="stringliteral">"3"</span>) != std::string::npos){</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  ImageCommentsT1mapWithColormap = ImageCommentsT1mapWithColormap.append(<span class="stringliteral">"ShMOLLI color 1198SD175ms"</span>);</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  clutRedString = getEncodedSting(getShmolliColormapRed3TArray());</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  clutGreenString = getEncodedSting(getShmolliColormapGreen3TArray());</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  clutBlueString = getEncodedSting(getShmolliColormapBlue3TArray());</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  printf(<span class="stringliteral">"Colormap for MagneticFieldStrength 3T is used.\n"</span>);</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  printf(<span class="stringliteral">"MagneticFieldStrength not detected, colormap will not be used.\n"</span>);</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  }</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="comment">// PaletteColorLookupTableUID</span></div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  std::string PaletteColorLookupTableUID;</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  itk::ExposeMetaData<std::string>(_dictionaryInput, <span class="stringliteral">"0028|1199"</span>, PaletteColorLookupTableUID);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_T1Color);</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_T1Color);</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_T1);</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1199"</span>), PaletteColorLookupTableUID); <span class="comment">// color look up table UID</span></div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_T1); <span class="comment">// series number</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0020|4000"</span>), ImageCommentsT1mapWithColormap); <span class="comment">// series number</span></div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"1"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2048"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> </div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1101"</span>), std::string(<span class="stringliteral">"4096\\0\\16"</span>)); <span class="comment">// red color look up table descriptor</span></div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1102"</span>), std::string(<span class="stringliteral">"4096\\0\\16"</span>)); <span class="comment">// green color look up table descriptor</span></div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1103"</span>), std::string(<span class="stringliteral">"4096\\0\\16"</span>)); <span class="comment">// blue color look up table descriptor</span></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1201"</span>), clutRedString);</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1202"</span>), clutGreenString);</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1Color, std::string(<span class="stringliteral">"0028|1203"</span>), clutBlueString);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="comment">// T1 map no color</span></div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  DictionaryType dictionaryOutput_T1(_dictionaryInput);</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  std::string sopInstanceUID_T1 = sopuid.Generate();</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> </div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_T1);</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_T1);</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_T1);</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> </div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_T1); <span class="comment">// series number</span></div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"ShMOLLI T1 map"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"2"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2048"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="comment">// R2 map</span></div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  DictionaryType dictionaryOutput_R2(_dictionaryInput);</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> </div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  std::string sopInstanceUID_R2 = sopuid.Generate();</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  std::string seriesUID_R2 = suid.Generate();</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> </div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  itk::ExposeMetaData<std::string>(_dictionaryInput, <span class="stringliteral">"0020|0011"</span>, seriesNumber);</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keywordflow">if</span> (_opts->output_fitparams_series_number == 0) {</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  _opts->output_fitparams_series_number = KWUtil::StringToNumber<int>(seriesNumber) + 10003;</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  }</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  std::string newSeriesNumber_R2 = KWUtil::NumberToString(_opts->output_fitparams_series_number);</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> </div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> </div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_R2);</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_R2);</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> </div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"Rsquare*4000 Map"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"3"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"3900"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_R2, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"200"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <span class="comment">// A map</span></div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  DictionaryType dictionaryOutput_A(_dictionaryInput);</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span> </div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  std::string sopInstanceUID_A = sopuid.Generate();</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_A);</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_A);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> </div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"Signal(TI)=[___AMap___]-B*exp(-TI/T1star)"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"4"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2000"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_A, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4000"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> </div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="comment">// B map</span></div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  DictionaryType dictionaryOutput_B(_dictionaryInput);</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> </div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  std::string sopInstanceUID_B = sopuid.Generate();</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span> </div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_B);</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_B);</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"Signal(TI)=A-[___BMap___]*exp(-TI/T1star)"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"5"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2000"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_B, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4000"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span> </div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="comment">// T1star map</span></div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  DictionaryType dictionaryOutput_T1star(_dictionaryInput);</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span> </div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  std::string sopInstanceUID_T1star = sopuid.Generate();</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span> </div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_T1star);</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_T1star);</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span> </div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span> </div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"Signal(TI)=A-B*exp(-TI/[___T1starMap___])"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"6"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2000"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_T1star, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4000"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="comment">// _ShMOLLIT1range map</span></div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  DictionaryType dictionaryOutput_ShMolliT1Range(_dictionaryInput);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  std::string sopInstanceUID_ShMolliT1Range = sopuid.Generate();</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_ShMolliT1Range);</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_ShMolliT1Range);</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span> </div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"_ShMOLLIT1range"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"7"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"1500"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_ShMolliT1Range, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"3000"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="comment">// _nAmebaCallFinal map</span></div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  DictionaryType dictionaryOutput_nAmebaCallFinal(_dictionaryInput);</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  std::string sopInstanceUID_nAmebaCallFinal = sopuid.Generate();</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span> </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_nAmebaCallFinal);</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_nAmebaCallFinal);</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span> </div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> </div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"_nAmebaCallFinal"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"8"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2000"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_nAmebaCallFinal, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4000"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span> </div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="comment">// _RelSNRFinal map</span></div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  DictionaryType dictionaryOutput_RelSNRFinal(_dictionaryInput);</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span> </div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  std::string sopInstanceUID_RelSNRFinal = sopuid.Generate();</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span> </div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0008|0018"</span>), sopInstanceUID_RelSNRFinal);</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0002|0003"</span>), sopInstanceUID_RelSNRFinal);</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0020|000e"</span>), seriesUID_R2);</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> </div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0020|0011"</span>), newSeriesNumber_R2); <span class="comment">// series number</span></div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span> </div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0020|4000"</span>), std::string(<span class="stringliteral">"_RelSNRFinal"</span>)); <span class="comment">// series number</span></div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0020|0013"</span>), std::string(<span class="stringliteral">"9"</span>)); <span class="comment">// instance number</span></div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0028|0106"</span>), std::string(<span class="stringliteral">"0"</span>)); <span class="comment">// smallest pixel</span></div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0028|0107"</span>), std::string(<span class="stringliteral">"4096"</span>)); <span class="comment">// largest pixel</span></div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0028|1050"</span>), std::string(<span class="stringliteral">"2000"</span>)); <span class="comment">// window center</span></div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  itk::EncapsulateMetaData<std::string>( dictionaryOutput_RelSNRFinal, std::string(<span class="stringliteral">"0028|1051"</span>), std::string(<span class="stringliteral">"4000"</span>)); <span class="comment">// window width</span></div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span> </div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <span class="comment">// get GDCMImageIO ready before export</span></div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <span class="keyword">typedef</span> itk::GDCMImageIO ImageIOType;</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  ImageIOType::Pointer gdcmImageIO = ImageIOType::New();</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  gdcmImageIO->KeepOriginalUIDOn();</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span> </div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="comment">// to cast</span></div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keyword">typedef</span> itk::AdaptImageFilter < ImageType2D, OutputImageType, CastPixelAccessor< InputPixelType, OutputPixelType > > ImageAdaptorType;</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keyword">typename</span> ImageAdaptorType::Pointer adaptor = ImageAdaptorType::New();</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="comment">// get the writer ready before export</span></div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <span class="keyword">typedef</span> itk::ImageFileWriter<OutputImageType> WriterType;</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keyword">typename</span> WriterType::Pointer writer = WriterType::New();</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  writer->SetUseInputMetaDataDictionary(<span class="keyword">false</span>);</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span> </div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="comment">// maybe this? http://www.cplusplus.com/reference/string/string/find_last_of/</span></div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="keywordflow">if</span> (!_opts->dir_output_map.empty()) {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span> </div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  printf(<span class="stringliteral">"Saving to: %s "</span>, _opts->dir_output_map.c_str());</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="comment">//std::cout << "Saving to: " << _opts->dir_output_map << std::flush;</span></div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span> </div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  itk::FileTools::CreateDirectory(_opts->dir_output_map);</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span> </div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="comment">// export T1 color</span></div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_T1Color);</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span> </div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  writer->SetFileName(_opts->dir_output_map + KWUtil::PathSeparator() + newSeriesNumber_T1 + <span class="stringliteral">"_T1color.dcm"</span>);</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  writer->Update();</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  }</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span> </div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  <span class="comment">// export T1 color</span></div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_T1);</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span> </div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  writer->SetFileName( _opts->dir_output_map + KWUtil::PathSeparator() + newSeriesNumber_T1 + <span class="stringliteral">"_T1.dcm"</span>);</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  writer->Update();</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  }</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  std::cout << <span class="stringliteral">" Saved!"</span> << std::endl;</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  }</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> </div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <span class="keywordflow">if</span> (!_opts->dir_output_fitparams.empty()) {</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span> </div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  printf(<span class="stringliteral">"Saving to: %s "</span>, _opts->dir_output_fitparams.c_str());</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  <span class="comment">//std::cout << "Saving to: " << _opts->dir_output_fitparams << std::flush;</span></div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span> </div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  <span class="comment">// scaling R2 * 4000</span></div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keyword">typedef</span> itk::MultiplyImageFilter< ImageType2D, ImageType2D, ImageType2D > MultiplyImageFilterType;</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  <span class="keyword">typename</span> MultiplyImageFilterType::Pointer multiplyFilter = MultiplyImageFilterType::New();</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  multiplyFilter->SetInput( _imageCalculatorItk->GetR2Image() );</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  multiplyFilter->SetConstant( 4000 );</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span> </div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  OxColorbarFilter->SetInput(multiplyFilter->GetOutput());</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span> </div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="comment">// mkdir</span></div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  itk::FileTools::CreateDirectory(_opts->dir_output_fitparams);</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span> </div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="comment">// export R2</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_R2);</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span> </div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_R2.dcm"</span>);</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  writer->Update();</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  }</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span> </div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  <span class="comment">// export A</span></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_A);</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span> </div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  OxColorbarFilter->SetInput(_imageCalculatorItk->GetAImage());</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span> </div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_A.dcm"</span>);</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  writer->Update();</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  }</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span> </div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  <span class="comment">// export B</span></div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_B);</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span> </div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  OxColorbarFilter->SetInput(_imageCalculatorItk->GetBImage());</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span> </div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_B.dcm"</span>);</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  writer->Update();</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  }</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span> </div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  <span class="comment">// export T1star</span></div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_T1star);</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span> </div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  OxColorbarFilter->SetInput(_imageCalculatorItk->GetT1starImage());</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_T1star.dcm"</span>);</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  writer->Update();</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  }</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span> </div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <span class="comment">// export ShMolliRange</span></div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_ShMolliT1Range);</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span> </div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  <span class="keyword">typedef</span> itk::NShmolliSamplesUsedTo123ImageFilter <ImageType2D> nShmolliSamplesUsedTo123FilterType;</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <span class="keyword">typename</span> nShmolliSamplesUsedTo123FilterType::Pointer nShmolliSamplesUsedTo123Filter = nShmolliSamplesUsedTo123FilterType::New();</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  nShmolliSamplesUsedTo123Filter->SetInput(_imageCalculatorItk->GetNShmolliSamplesUsedImage());</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span> </div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  OxColorbarFilter->SetInput(nShmolliSamplesUsedTo123Filter->GetOutput());</div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span> </div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_ShMolliRange.dcm"</span>);</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  writer->Update();</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  }</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span> </div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="comment">// TODO: change chisquare to final call value</span></div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="comment">// export nAmebaCalls</span></div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_nAmebaCallFinal);</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span> </div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  OxColorbarFilter->SetInput(_imageCalculatorItk->GetChiSqrtImage());</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span> </div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_nAmebaCallFinal.dcm"</span>);</div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  writer->Update();</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  }</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span> </div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="comment">// TODO: check, values seem a little low</span></div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  <span class="comment">// export RelSNRFinal</span></div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  gdcmImageIO->SetMetaDataDictionary(dictionaryOutput_RelSNRFinal);</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span> </div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  OxColorbarFilter->SetInput(_imageCalculatorItk->GetSNRImage());</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  OxColorbarFilter->SetZerosInsteadOfColorbar(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span> </div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="comment">// export to dicom</span></div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  adaptor->SetInput(OxColorbarFilter->GetOutput());</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  writer->SetFileName(_opts->dir_output_fitparams + KWUtil::PathSeparator() + newSeriesNumber_R2 + <span class="stringliteral">"_RelSNRFinal.dcm"</span>);</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  writer->SetInput(adaptor->GetOutput());</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  writer->SetImageIO(gdcmImageIO);</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  writer->Update();</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  } <span class="keywordflow">catch</span> (itk::ExceptionObject &e) {</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  std::cerr << <span class="stringliteral">"Exception in file writer "</span> << std::endl;</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  std::cerr << e << std::endl;</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  }</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  std::cout << <span class="stringliteral">" Saved!"</span> << std::endl;</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  }</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  </div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  <span class="keywordflow">return</span> 0; <span class="comment">// EXIT_SUCCESS</span></div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  }</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span> </div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span> } <span class="comment">// namespace Ox</span></div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span> </div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span> <span class="preprocessor">#endif //Tomato_Tomato_EXPORT_HXX</span></div>
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