swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">itkCalculatorT1ImageFilter.hxx</div> </div>
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<a href="itk_calculator_t1_image_filter_8hxx.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef itkCalculatorT1ImageFilter_txx</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define itkCalculatorT1ImageFilter_txx</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">namespace </span>itk {</div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> </div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span>  ::CalculatorT1ImageFilter() {</div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> </div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span>  this->m_LimitOutputIntensity = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span>  this->m_UpperLimitOutputIntensity = 4000;</div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  this->m_LowerLimitOutputIntensity = 0;</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  this->SetNumberOfRequiredInputs(1);</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  this->SetNumberOfRequiredOutputs(12);</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> i = 0; i < this->GetNumberOfRequiredOutputs(); ++i) {</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  this->SetNthOutput(i, (TImageOut::New()).GetPointer());</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  }</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> </div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  this->m_ImageRegionSplitter = ImageRegionSplitterDirection::New();</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  this->m_ImageRegionSplitter->SetDirection(2);</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> </div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  }</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  ::SetInputMagImage(<span class="keyword">const</span> TImageIn *image) {</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  this->SetNthInput(0, const_cast<TImageIn *>(image));</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  }</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  ::SetInputPhaImage(<span class="keyword">const</span> TImageIn *image) {</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  this->SetNthInput(1, const_cast<TImageIn *>(image));</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  }</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  ::BeforeThreadedGenerateData() {</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="keywordflow">if</span>(!m_Calculator) <span class="keywordflow">throw</span> itk::ExceptionObject(__FILE__, __LINE__, <span class="stringliteral">"Set the Calculator!"</span>);</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  printf(<span class="stringliteral">"Number of threads: %d. "</span>, this->GetNumberOfThreads());</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="keywordflow">if</span> (m_Calculator->getInvTimes()) {</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  printf(<span class="stringliteral">"\nInvTimes: "</span>);</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < m_Calculator->getNSamples(); i++) {</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  printf(<span class="stringliteral">"%.0f "</span>, m_Calculator->getInvTimes()[i]);</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  }</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  }</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keywordflow">if</span> (m_Calculator->getEchoTimes()) {</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  printf(<span class="stringliteral">"\nEchoTimes: "</span>);</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < m_Calculator->getNSamples(); i++) {</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  printf(<span class="stringliteral">"%.1f "</span>, m_Calculator->getEchoTimes()[i]);</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  }</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  }</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  printf(<span class="stringliteral">"\n"</span>);</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  }</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  ::GenerateOutputInformation(){</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keyword">typename</span> TImageIn::ConstPointer imageMag = this->GetInput(0);</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="keyword">typename</span> TImageIn::RegionType magImageRegion = imageMag->GetLargestPossibleRegion();</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <span class="keyword">typename</span> TImageOut::IndexType start;</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  start[0] = magImageRegion.GetIndex()[0];</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  start[1] = magImageRegion.GetIndex()[1];</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keyword">typename</span> TImageOut::SizeType size;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  size[0] = magImageRegion.GetSize()[0];</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  size[1] = magImageRegion.GetSize()[1];</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="keyword">typename</span> TImageOut::RegionType region;</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  region.SetSize(size);</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  region.SetIndex(start);</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="keyword">typename</span> TImageOut::SpacingType spacing;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  spacing[0] = imageMag->GetSpacing()[0];</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  spacing[1] = imageMag->GetSpacing()[1];</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <span class="keyword">typename</span> TImageOut::PointType origin;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  origin[0] = imageMag->GetOrigin()[0];</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  origin[1] = imageMag->GetOrigin()[1];</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> </div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keyword">typename</span> TImageOut::DirectionType direction;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  direction[0][0] = imageMag->GetDirection()[0][0];</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  direction[0][1] = imageMag->GetDirection()[0][1];</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  direction[1][0] = imageMag->GetDirection()[1][0];</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  direction[1][1] = imageMag->GetDirection()[1][1];</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < this->GetNumberOfOutputs(); i++){</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  this->GetOutput(i)->SetLargestPossibleRegion(region);</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  this->GetOutput(i)->SetSpacing(spacing);</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  this->GetOutput(i)->SetOrigin(origin);</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  this->GetOutput(i)->SetDirection(direction);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  }</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  }</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keyword">typename</span> TImageOut::PixelType</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  ::LimitResult( <span class="keyword">typename</span> TImageOut::PixelType result ) {</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> </div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="keywordflow">if</span> (GetLimitOutputIntensity()) {</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="keywordflow">if</span> (result < m_LowerLimitOutputIntensity) {</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  result = m_LowerLimitOutputIntensity;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  }</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="keywordflow">if</span> (result > m_UpperLimitOutputIntensity) {</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  result = m_UpperLimitOutputIntensity;</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  }</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  }</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="keywordflow">return</span> result;</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  }</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> </div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  ::ThreadedGenerateData( <span class="keyword">const</span> OutputImageRegionType& outputRegionForThread, ThreadIdType threadId ){</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> </div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <span class="keyword">typename</span> TImageIn::IndexType idx;</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> </div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <span class="keyword">typename</span> TImageIn::ConstPointer imageMag = this->GetInput(0);</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <span class="keyword">typename</span> TImageIn::ConstPointer imagePha = this->GetInput(1);</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  std::vector<typename TImageOut::Pointer> outputImagesVector;</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < this->GetNumberOfOutputs(); ++i){</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  outputImagesVector.push_back(this->GetOutput(i));</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  }</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keyword">typename</span> TImageIn::SizeType magImageSize = imageMag->GetLargestPossibleRegion().GetSize();</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="keyword">typename</span> TImageIn::SizeType inputSize = imageMag->GetLargestPossibleRegion().GetSize();</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  inputSize[0] = outputRegionForThread.GetSize()[0];</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  inputSize[1] = outputRegionForThread.GetSize()[1];</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <span class="keyword">typename</span> TImageIn::IndexType inputIndex = imageMag->GetLargestPossibleRegion().GetIndex();;</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  inputIndex[0] = outputRegionForThread.GetIndex()[0];</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  inputIndex[1] = outputRegionForThread.GetIndex()[1];</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> </div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="keyword">typename</span> TImageIn::RegionType inputRegion = imageMag->GetLargestPossibleRegion();</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  inputRegion.SetSize(inputSize);</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  inputRegion.SetIndex(inputIndex);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> </div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <span class="keyword">typedef</span> itk::ImageLinearConstIteratorWithIndex< TImageIn > InputIteratorType;</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="keyword">typedef</span> itk::ImageRegionIterator< TImageOut > OutputIteratorType;</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> </div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  InputIteratorType itMag( imageMag, inputRegion );</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  InputIteratorType itPha;</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> </div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordflow">if</span> (imagePha) {</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  InputIteratorType temp( imagePha, inputRegion );</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  itPha = temp;</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  }</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> </div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  std::vector<OutputIteratorType> itOutVector;</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < outputImagesVector.size(); ++i){</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  itOutVector.push_back(OutputIteratorType(outputImagesVector[i], outputRegionForThread));</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  }</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> </div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  itMag.SetDirection( 2 ); <span class="comment">// Walk along third dimension it.GoToBegin();</span></div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordflow">if</span> (imagePha) itPha.SetDirection( 2 ); <span class="comment">// Walk along third dimension it.GoToBegin();</span></div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="keywordtype">int</span> nSamples = magImageSize[2];</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <a class="code" href="class_ox_1_1_calculator.html">Ox::Calculator<PixelTypeIn></a> *calculator = m_Calculator-><a class="code" href="class_ox_1_1_calculator.html#aaec48f39f9b0ea1b622485cf25fba484">newByCloning</a>();</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  <a class="code" href="class_ox_1_1_model.html">Ox::Model<PixelTypeIn></a> *functionsObject = m_Calculator->getModel()-><a class="code" href="class_ox_1_1_model.html#a694868476dd17a4d203f4ebc57047d2f">newByCloning</a>();</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <a class="code" href="class_ox_1_1_fitter.html">Ox::Fitter<PixelTypeIn></a> *fitter = m_Calculator->getFitter()-><a class="code" href="class_ox_1_1_fitter.html#a665ec51e52ed351c9ef801acc83fbdea">newByCloning</a>();</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <a class="code" href="class_ox_1_1_sign_calculator.html">Ox::SignCalculator<PixelTypeIn></a> *signCalculator = 0;</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="keywordflow">if</span> (m_Calculator->getSignCalculator()) {</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  signCalculator = m_Calculator->getSignCalculator()-><a class="code" href="class_ox_1_1_sign_calculator.html#a40d9d97a505a69b687429bf545597687">newByCloning</a>();</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  }</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <a class="code" href="class_ox_1_1_start_point_calculator.html">Ox::StartPointCalculator<PixelTypeIn></a> *startPointCalculator = 0;</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keywordflow">if</span> (m_Calculator->getStartPointCalculator()) {</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  startPointCalculator = m_Calculator->getStartPointCalculator()-><a class="code" href="class_ox_1_1_start_point_calculator.html#acd2a221872002157f232e1e7f73a1859">newByCloning</a>();</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  }</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span> </div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="comment">// configure</span></div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  calculator->setModel(functionsObject);</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  calculator->setFitter(fitter);</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  calculator->setSignCalculator(signCalculator);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  calculator->setStartPointCalculator(startPointCalculator);</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  calculator-><a class="code" href="class_ox_1_1_calculator.html#a1d0d07b7840883449168448983d43289">setNSamples</a>(nSamples);</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  calculator->setInvTimes(m_Calculator->getInvTimes());</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  calculator->setEchoTimes(m_Calculator->getEchoTimes());</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  calculator->setNoise(m_Calculator->getNoise());</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="comment">// set the thread id in the minimiser</span></div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  fitter->setThreadId(threadId);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> <span class="comment">// // make sure calculator is ready to calculate</span></div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> <span class="comment">// calculator->VerifyReadyToCalculate();</span></div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span> </div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="comment">// move output iterators</span></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < outputImagesVector.size(); ++i) {</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  itOutVector[i].GoToBegin();</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  }</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  <span class="comment">// init alloc</span></div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  PixelTypeIn *sigMag = <span class="keyword">new</span> PixelTypeIn[nSamples];</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  PixelTypeIn *sigPha = <span class="keyword">new</span> PixelTypeIn[nSamples];</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span> </div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  <span class="keywordflow">while</span>( !itMag.IsAtEnd() ) {</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="comment">// move input iterators</span></div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  itMag.GoToBeginOfLine();</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="comment">// itPha.GoToBeginOfLine();</span></div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keywordflow">if</span> (imagePha) itPha.GoToBeginOfLine();</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="comment">// get mag and phase from the iterators</span></div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keywordflow">while</span> ( !itMag.IsAtEndOfLine() ) {</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="comment">// get index</span></div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  idx = itMag.GetIndex();</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span> </div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="comment">// get mag and phase</span></div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  sigMag[idx[2]] = itMag.Get();</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keywordflow">if</span> (imagePha) sigPha[idx[2]] = itPha.Get();</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span> </div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  <span class="comment">// move iterators</span></div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  ++itMag;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  <span class="keywordflow">if</span> (imagePha) ++itPha;</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  }</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> </div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="comment">// set Mag and Phase</span></div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  calculator->setSigMag(sigMag);</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  calculator->setSigPha(sigPha);</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span> </div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="comment">// calculate</span></div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  calculator-><a class="code" href="class_ox_1_1_calculator.html#a01267c4e842b35f7eacaa9aacdd7e766">prepareToCalculate</a>();</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  calculator-><a class="code" href="class_ox_1_1_calculator.html#a9638894f2ec526b68f46f02122bae0c3">calculate</a>();</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span> </div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="comment">// to add/remove output</span></div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  <span class="comment">// 1. change this->SetNumberOfRequiredOutputs(XXX); in the constructor</span></div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="comment">// 2. add GetXXXImage method. Numbers below have to agree with GetXXXImage methods</span></div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  itOutVector[0].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"T1"</span>]));</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  itOutVector[1].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"R2"</span>]));</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  itOutVector[2].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"A"</span>]));</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  itOutVector[3].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"B"</span>]));</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  itOutVector[4].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"T1star"</span>]));</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  itOutVector[5].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"ChiSqrt"</span>]));</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  itOutVector[6].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"SNR"</span>]));</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  itOutVector[7].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"NShmolliSamplesUsed"</span>]));</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  itOutVector[8].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"SD_A"</span>]));</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  itOutVector[9].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"SD_B"</span>]));</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  itOutVector[10].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"SD_T1"</span>]));</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  itOutVector[11].Set(LimitResult(calculator->getResults()[<span class="stringliteral">"T2"</span>]));</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span> </div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="comment">// iterate all iterators accordingly</span></div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < outputImagesVector.size(); ++i) {</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  ++itOutVector[i];</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  }</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  itMag.NextLine();</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <span class="keywordflow">if</span> (imagePha) itPha.NextLine();</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  }</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span> </div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="comment">// cleanup</span></div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keyword">delete</span> functionsObject;</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="keyword">delete</span> fitter;</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keyword">delete</span> signCalculator;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keyword">delete</span> startPointCalculator;</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="keyword">delete</span> calculator;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keyword">delete</span> [] sigMag;</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  <span class="keyword">delete</span> [] sigPha;</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  }</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span> </div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  TImageOut*</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  ::GetT1Image() {</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  this->ProcessObject::GetOutput(0) );</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  }</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span> </div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  TImageOut*</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  ::GetR2Image() {</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  this->ProcessObject::GetOutput(1) );</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  }</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> </div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  TImageOut*</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  ::GetAImage() {</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  this->ProcessObject::GetOutput(2) );</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  }</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span> </div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  TImageOut*</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  ::GetBImage() {</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  this->ProcessObject::GetOutput(3) );</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  }</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span> </div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  TImageOut*</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  ::GetT1starImage() {</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  this->ProcessObject::GetOutput(4) );</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  }</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span> </div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  TImageOut*</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  ::GetChiSqrtImage(){</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  this->ProcessObject::GetOutput(5) );</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  }</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span> </div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  TImageOut*</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  ::GetSNRImage() {</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  this->ProcessObject::GetOutput(6) );</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  }</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> </div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  TImageOut*</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  ::GetNShmolliSamplesUsedImage() {</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  this->ProcessObject::GetOutput(7) );</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  }</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> </div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  TImageOut*</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  ::GetSD_AImage() {</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  this->ProcessObject::GetOutput(8) );</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  }</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  TImageOut*</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  ::GetSD_BImage() {</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  this->ProcessObject::GetOutput(9) );</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  }</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span> </div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  TImageOut*</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  ::GetSD_T1Image() {</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  this->ProcessObject::GetOutput(10) );</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  }</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> </div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut ></div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  TImageOut*</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  CalculatorT1ImageFilter<TImageIn, TImageOut></div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  ::GetT2Image() {</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <span class="keywordflow">return</span> <span class="keyword">dynamic_cast<</span> TImageOut * <span class="keyword">></span>(</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  this->ProcessObject::GetOutput(11) );</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  }</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> </div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span> }<span class="comment">// end namespace itk</span></div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> </div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span> <span class="preprocessor">#endif // USE_ITK</span></div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> <span class="preprocessor">#endif //itkCalculatorT1ImageFilter_txx</span></div>
<div class="ttc" id="class_ox_1_1_sign_calculator_html_a40d9d97a505a69b687429bf545597687"><div class="ttname"><a href="class_ox_1_1_sign_calculator.html#a40d9d97a505a69b687429bf545597687">Ox::SignCalculator::newByCloning</a></div><div class="ttdeci">virtual SignCalculator< MeasureType > * newByCloning()=0</div></div>
<div class="ttc" id="class_ox_1_1_model_html"><div class="ttname"><a href="class_ox_1_1_model.html">Ox::Model</a></div><div class="ttdoc">Container for a model function, cost function and Least-Squares function. And derivatives. </div><div class="ttdef"><b>Definition:</b> OxModel.h:25</div></div>
<div class="ttc" id="class_ox_1_1_calculator_html_a01267c4e842b35f7eacaa9aacdd7e766"><div class="ttname"><a href="class_ox_1_1_calculator.html#a01267c4e842b35f7eacaa9aacdd7e766">Ox::Calculator::prepareToCalculate</a></div><div class="ttdeci">virtual int prepareToCalculate()=0</div></div>
<div class="ttc" id="class_ox_1_1_calculator_html"><div class="ttname"><a href="class_ox_1_1_calculator.html">Ox::Calculator</a></div><div class="ttdef"><b>Definition:</b> OxCalculator.h:28</div></div>
<div class="ttc" id="class_ox_1_1_model_html_a694868476dd17a4d203f4ebc57047d2f"><div class="ttname"><a href="class_ox_1_1_model.html#a694868476dd17a4d203f4ebc57047d2f">Ox::Model::newByCloning</a></div><div class="ttdeci">virtual Model< MeasureType > * newByCloning()=0</div></div>
<div class="ttc" id="class_ox_1_1_sign_calculator_html"><div class="ttname"><a href="class_ox_1_1_sign_calculator.html">Ox::SignCalculator</a></div><div class="ttdef"><b>Definition:</b> OxSignCalculator.h:21</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html_acd2a221872002157f232e1e7f73a1859"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html#acd2a221872002157f232e1e7f73a1859">Ox::StartPointCalculator::newByCloning</a></div><div class="ttdeci">virtual StartPointCalculator< MeasureType > * newByCloning()=0</div></div>
<div class="ttc" id="class_ox_1_1_start_point_calculator_html"><div class="ttname"><a href="class_ox_1_1_start_point_calculator.html">Ox::StartPointCalculator</a></div><div class="ttdef"><b>Definition:</b> OxStartPointCalculator.h:21</div></div>
<div class="ttc" id="class_ox_1_1_calculator_html_a9638894f2ec526b68f46f02122bae0c3"><div class="ttname"><a href="class_ox_1_1_calculator.html#a9638894f2ec526b68f46f02122bae0c3">Ox::Calculator::calculate</a></div><div class="ttdeci">virtual int calculate()=0</div></div>
<div class="ttc" id="class_ox_1_1_fitter_html_a665ec51e52ed351c9ef801acc83fbdea"><div class="ttname"><a href="class_ox_1_1_fitter.html#a665ec51e52ed351c9ef801acc83fbdea">Ox::Fitter::newByCloning</a></div><div class="ttdeci">virtual Fitter< MeasureType > * newByCloning()=0</div></div>
<div class="ttc" id="class_ox_1_1_fitter_html"><div class="ttname"><a href="class_ox_1_1_fitter.html">Ox::Fitter</a></div><div class="ttdef"><b>Definition:</b> OxFitter.h:22</div></div>
<div class="ttc" id="class_ox_1_1_calculator_html_aaec48f39f9b0ea1b622485cf25fba484"><div class="ttname"><a href="class_ox_1_1_calculator.html#aaec48f39f9b0ea1b622485cf25fba484">Ox::Calculator::newByCloning</a></div><div class="ttdeci">virtual Calculator< MeasureType > * newByCloning()=0</div></div>
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