swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
itk_read_file_list_filter_8h_source.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.6"/>
<title>Tomato: lib/itkReadFileListFilter.h Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="navtree.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="resize.js"></script>
<script type="text/javascript" src="navtree.js"></script>
<script type="text/javascript">
$(document).ready(initResizable);
$(window).load(resizeHeight);
</script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/search.js"></script>
<script type="text/javascript">
$(document).ready(function() { searchBox.OnSelectItem(0); });
</script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td style="padding-left: 0.5em;">
<div id="projectname">Tomato
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.6 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<div id="navrow1" class="tabs">
<ul class="tablist">
<li><a href="index.html"><span>Main Page</span></a></li>
<li><a href="pages.html"><span>Related Pages</span></a></li>
<li><a href="annotated.html"><span>Classes</span></a></li>
<li class="current"><a href="files.html"><span>Files</span></a></li>
<li>
<div id="MSearchBox" class="MSearchBoxInactive">
<span class="left">
<img id="MSearchSelect" src="search/mag_sel.png"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
alt=""/>
<input type="text" id="MSearchField" value="Search" accesskey="S"
onfocus="searchBox.OnSearchFieldFocus(true)"
onblur="searchBox.OnSearchFieldFocus(false)"
onkeyup="searchBox.OnSearchFieldChange(event)"/>
</span><span class="right">
<a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a>
</span>
</div>
</li>
</ul>
</div>
<div id="navrow2" class="tabs2">
<ul class="tablist">
<li><a href="files.html"><span>File List</span></a></li>
<li><a href="globals.html"><span>File Members</span></a></li>
</ul>
</div>
</div><!-- top -->
<div id="side-nav" class="ui-resizable side-nav-resizable">
<div id="nav-tree">
<div id="nav-tree-contents">
<div id="nav-sync" class="sync"></div>
</div>
</div>
<div id="splitbar" style="-moz-user-select:none;"
class="ui-resizable-handle">
</div>
</div>
<script type="text/javascript">
$(document).ready(function(){initNavTree('itk_read_file_list_filter_8h_source.html','');});
</script>
<div id="doc-content">
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
<a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark"> </span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark"> </span>Classes</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark"> </span>Files</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark"> </span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark"> </span>Typedefs</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(5)"><span class="SelectionMark"> </span>Pages</a></div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
<div class="header">
<div class="headertitle">
<div class="title">itkReadFileListFilter.h</div> </div>
</div><!--header-->
<div class="contents">
<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">//</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// itkReadFileListFilter.h</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// TomatoLib</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">//</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Created by Konrad Werys on 19/08/17.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// Copyright © 2017 Konrad Werys. All rights reserved.</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">//</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#ifndef TomatoLIB_ITKREADFILELISTFILTER_H</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor"></span><span class="preprocessor">#define TomatoLIB_ITKREADFILELISTFILTER_H</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> </div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "itkImageFileReaderKW.h"</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "itkTileImageFilter.h"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "itkGDCMImageIO.h"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include "itkMetaDataObject.h"</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> </div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="keyword">namespace </span>itk {</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="keyword">class </span>ReadFileListFilter :<span class="keyword">public</span> ImageSource< TImage > {</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keyword">typedef</span> ReadFileListFilter Self;</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keyword">typedef</span> ImageSource <TImage> Superclass;</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keyword">typedef</span> SmartPointer <Self> Pointer;</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  itkNewMacro(Self);</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keyword">typedef</span> TImage ImageType3D;</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> ImageType3D::PixelType PixelType;</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keyword">typedef</span> itk::Image< PixelType, 2 > ImageType2D;</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">typedef</span> <a class="code" href="classitk_1_1_image_file_reader_k_w.html">itk::ImageFileReaderKW< ImageType3D ></a> ReaderType;</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="keyword">typedef</span> itk::TileImageFilter< ImageType3D, ImageType3D > TileImageType;</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="keyword">typedef</span> std::vector<std::string> FileListType;</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keyword">typedef</span> std::vector<MetaDataDictionary> MetaDataDictionaryArrayType;</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  <span class="keyword">typedef</span> itk::MetaDataDictionary DictionaryType;</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="keyword">typedef</span> itk::MetaDataObject< std::string > MetaDataStringType;</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="comment">// setters</span></div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keywordtype">void</span> SetFileList(std::vector<std::string> fileList);</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  <span class="keywordtype">void</span> SetDirName(std::string dirName);</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  itkSetMacro(Verbose, <span class="keywordtype">bool</span>);</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  vnl_vector<TYPE> GetVnlVectorFromStdVector(std::vector<TYPE> stdVector);</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="comment">// getters</span></div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  vnl_vector<double> GetInvTimes();</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  vnl_vector<double> GetRepTimes();</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  vnl_vector<double> GetEchoTimes();</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  vnl_vector<double> GetTriggerTimes();</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  vnl_vector<double> GetAcqTimes();</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  vnl_vector<double> GetRelAcqTimes();</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keyword">const</span> std::vector<std::string> &GetFileList() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">const</span> std::string &GetDirName() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  itkGetMacro(MetaDataDictionaryArray, MetaDataDictionaryArrayType);</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  itkGetObjectMacro(DicomIO, GDCMImageIO);</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  itkGetMacro(Verbose, <span class="keywordtype">bool</span>);</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  ReadFileListFilter();</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> </div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keyword">virtual</span> ~ReadFileListFilter(){};</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> GenerateData() ITK_OVERRIDE;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  private:</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  ITK_DISALLOW_COPY_AND_ASSIGN(ReadFileListFilter);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  std::vector<std::<span class="keywordtype">string</span>> m_FileList;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  std::<span class="keywordtype">string</span> m_DirName;</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  std::vector<<span class="keywordtype">double</span>> m_InvTimes;</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  std::vector<<span class="keywordtype">double</span>> m_InvTimes20051572;</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  std::vector<<span class="keywordtype">double</span>> m_InvTimes00211189;</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  std::vector<<span class="keywordtype">double</span>> m_InvTimesFromImageComments;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  std::vector<<span class="keywordtype">double</span>> m_RepTimes;</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  std::vector<<span class="keywordtype">double</span>> m_EchoTimes;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  std::vector<<span class="keywordtype">double</span>> m_EchoTimes00191016;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  std::vector<<span class="keywordtype">double</span>> m_EchoTimes00209158;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  std::vector<<span class="keywordtype">double</span>> m_EchoTimesFromImageComments;</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  std::vector<<span class="keywordtype">double</span>> m_TriggerTimes;</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  std::vector<<span class="keywordtype">double</span>> m_AcqTimes;</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  MetaDataDictionaryArrayType m_MetaDataDictionaryArray;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  GDCMImageIO::Pointer m_DicomIO;</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="keywordtype">bool</span> m_Verbose;</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> </div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keywordtype">double</span> FindInversionTime(ReaderType* reader);</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keywordtype">double</span> FindInversionTime20051572(ReaderType* reader);</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="keywordtype">double</span> FindInversionTime00211189(ReaderType* reader);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  <span class="keywordtype">double</span> FindInversionTimeFromImageComments(ReaderType* reader);</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="keywordtype">double</span> FindRepetitionTime(ReaderType* reader);</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="keywordtype">double</span> FindEchoTime(ReaderType* reader);</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="keywordtype">double</span> FindEchoTime00191016(ReaderType* reader);</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keywordtype">double</span> FindEchoTime00209158(ReaderType* reader);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="keywordtype">double</span> FindEchoTimeFromImageComments(ReaderType* reader);</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keywordtype">double</span> FindTriggerTime(ReaderType* reader);</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keywordtype">double</span> FindAcqTime(ReaderType* reader);</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  };</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> }</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> <span class="preprocessor">#ifndef TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> <span class="preprocessor"></span><span class="preprocessor">#ifndef ITK_MANUAL_INSTANTIATION</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> <span class="preprocessor"></span><span class="preprocessor">#include "itkReadFileListFilter.hxx"</span></div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span> <span class="preprocessor">#endif //ITK_MANUAL_INSTANTIATION</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> <span class="preprocessor"></span><span class="preprocessor">#endif //TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> <span class="preprocessor">#endif // USE_ITK</span></div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span> <span class="preprocessor">#endif //TomatoLIB_ITKREADFILELISTFILTER_H</span></div>
<div class="ttc" id="classitk_1_1_image_file_reader_k_w_html"><div class="ttname"><a href="classitk_1_1_image_file_reader_k_w.html">itk::ImageFileReaderKW</a></div><div class="ttdoc">Data source that reads image data from a single file. </div><div class="ttdef"><b>Definition:</b> itkImageFileReaderKW.h:76</div></div>
</div><!-- fragment --></div><!-- contents -->
</div><!-- doc-content -->
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="navelem"><a class="el" href="dir_97aefd0d527b934f1d99a682da8fe6a9.html">lib</a></li><li class="navelem"><b>itkReadFileListFilter.h</b></li>
<li class="footer">Generated by
<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.6 </li>
</ul>
</div>
</body>
</html>
