swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
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<div class="title">itkReadFileListFilter.hxx</div> </div>
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<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">//</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// itkReadFileListFilter.h</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// TomatoLib</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">//</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Created by Konrad Werys on 07/11/19.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// Copyright © 2017 Konrad Werys. All rights reserved.</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">//</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#ifndef TomatoLIB_ITKREADFILELISTFILTER_HXX</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor"></span><span class="preprocessor">#define TomatoLIB_ITKREADFILELISTFILTER_HXX</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "gdcmTomatoReadTags.h"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> </div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include <string></span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "itkGDCMImageIO.h"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include "itkStatisticsImageFilter.h"</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include "KWUtil.h"</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="preprocessor">#include "itkReadFileListFilter.h"</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="preprocessor">#include "itkDirectory.h"</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="preprocessor">#include "gdcmBase64.h"</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="preprocessor">#include "gdcmTomatoReadTags.h"</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="keyword">namespace </span>itk {</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  ReadFileListFilter<TImage>::</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  ReadFileListFilter(){</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  m_Verbose = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  }</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  ::SetFileList(<span class="keyword">const</span> std::vector<std::string> fileList){</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  m_FileList = fileList;</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  }</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImage></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keywordtype">void</span> ReadFileListFilter<TImage>::SetDirName(<span class="keyword">const</span> std::string dirName) {</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  m_DirName = dirName;</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="keywordflow">if</span> (m_DirName.empty()) {</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  }</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="keyword">typename</span> itk::Directory::Pointer directory = itk::Directory::New();</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  directory->Load(m_DirName.c_str());</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < directory->GetNumberOfFiles(); i++){</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  std::string fileName = directory->GetFile(i);</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keywordflow">if</span> (fileName == <span class="stringliteral">"."</span> || fileName == <span class="stringliteral">".."</span> || fileName == <span class="stringliteral">".DS_Store"</span>){</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  }</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  m_FileList.push_back(m_DirName + KWUtil::PathSeparator() + fileName);</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  }</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  }</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> </div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TYPE ></div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  vnl_vector<TYPE></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  ::GetVnlVectorFromStdVector(std::vector<TYPE> stdVector){</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="keywordflow">if</span> (stdVector.size() == 0){</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keywordflow">return</span> vnl_vector<TYPE>();</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keywordflow">return</span> vnl_vector<TYPE>(&stdVector.front(), stdVector.size());</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  }</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  }</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  vnl_vector<double></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  ::GetInvTimes(){</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  vnl_vector<double> invTimesVnl = GetVnlVectorFromStdVector(m_InvTimes);</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  vnl_vector<double> invTimesVnl20051572 = GetVnlVectorFromStdVector(m_InvTimes20051572);</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  vnl_vector<double> invTimesVnl00211189 = GetVnlVectorFromStdVector(m_InvTimes00211189);</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  vnl_vector<double> invTimesVnlFromImageCommentsVnl = GetVnlVectorFromStdVector(m_InvTimesFromImageComments);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  vnl_vector<double> triggerTimesVnl = GetVnlVectorFromStdVector(m_TriggerTimes);</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keywordflow">if</span> (invTimesVnl.min_value() != invTimesVnl.max_value()) {</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keywordflow">return</span> invTimesVnl;</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (invTimesVnl20051572.min_value() != invTimesVnl20051572.max_value()) {</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keywordflow">return</span> invTimesVnl20051572;</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (invTimesVnl00211189.min_value() != invTimesVnl00211189.max_value()) {</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="keywordflow">return</span> invTimesVnl00211189;</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (invTimesVnlFromImageCommentsVnl.min_value() != invTimesVnlFromImageCommentsVnl.max_value()) {</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <span class="keywordflow">return</span> invTimesVnlFromImageCommentsVnl;</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (triggerTimesVnl.min_value() != triggerTimesVnl.max_value()) {</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="keywordflow">return</span> triggerTimesVnl;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="keywordflow">return</span> invTimesVnl;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  }</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  }</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  vnl_vector<double></div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  ::GetRepTimes(){</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="keywordflow">return</span> GetVnlVectorFromStdVector(m_RepTimes);</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  }</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  vnl_vector<double></div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  ::GetEchoTimes(){</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  vnl_vector<double> echoTimesVnl = GetVnlVectorFromStdVector(m_EchoTimes);</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  vnl_vector<double> echoTimes00191016Vnl = GetVnlVectorFromStdVector(m_EchoTimes00191016);</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  vnl_vector<double> echoTimes00209158Vnl = GetVnlVectorFromStdVector(m_EchoTimes00209158);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  vnl_vector<double> echoTimesFromImageCommentsVnl = GetVnlVectorFromStdVector(m_EchoTimesFromImageComments);</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keywordflow">if</span> (echoTimesVnl.min_value() != echoTimesVnl.max_value()) {</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keywordflow">return</span> echoTimesVnl;</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (echoTimesFromImageCommentsVnl.min_value() != echoTimesFromImageCommentsVnl.max_value()) {</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keywordflow">return</span> echoTimesFromImageCommentsVnl;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (echoTimes00191016Vnl.min_value() != echoTimes00191016Vnl.max_value()) {</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="keywordflow">return</span> echoTimes00191016Vnl;</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (echoTimes00209158Vnl.min_value() != echoTimes00209158Vnl.max_value()) {</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="keywordflow">return</span> echoTimes00209158Vnl;</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="keywordflow">return</span> echoTimesVnl;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  }</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  }</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  vnl_vector<double></div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  ::GetTriggerTimes(){</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="keywordflow">return</span> GetVnlVectorFromStdVector(m_TriggerTimes);</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  }</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> </div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  vnl_vector<double></div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  ::GetAcqTimes(){</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keywordflow">return</span> GetVnlVectorFromStdVector(m_AcqTimes);</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  }</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> </div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> TImage ></div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  vnl_vector<double></div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  ReadFileListFilter<TImage></div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  ::GetRelAcqTimes(){</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  vnl_vector<double> temp = GetAcqTimes();</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <span class="keywordtype">double</span> mymin = temp.min_value();</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < temp.size(); ++i){</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  temp[i] = temp[i] - mymin;</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  }</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordflow">return</span> temp;</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  }</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> </div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage ></div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="keywordtype">void</span></div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  ReadFileListFilter< TImage ></div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  ::GenerateData() {</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="comment">// see https://itk.org/Wiki/ITK/Examples/ImageProcessing/TileImageFilter_CreateVolume</span></div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <span class="keyword">typename</span> ImageType3D::Pointer outputImage;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span> </div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  m_DicomIO = GDCMImageIO::New();</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  m_DicomIO->LoadPrivateTagsOn();</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> </div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  itk::FixedArray< PixelType, 3 > layout;</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  layout[0] = 1;</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  layout[1] = 1;</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  layout[2] = m_FileList.size();</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> </div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="comment">// tiler</span></div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <span class="keyword">typename</span> TileImageType::Pointer tiler = TileImageType::New();</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  tiler->SetLayout( layout );</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> </div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keyword">typename</span> ReaderType::Pointer reader;</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> </div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <span class="comment">// the main loop</span></div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> inputImageNumber = 0;</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordflow">for</span> ( <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < m_FileList.size(); ++i ){</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="comment">//reader</span></div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  reader = ReaderType::New();</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  reader->SetImageIO(m_DicomIO);</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  reader->SetFileName( m_FileList[i] );</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  m_DicomIO->SetFileName(m_FileList[i]);</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  m_DicomIO->ReadImageInformation();</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  reader->Update();</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span> </div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  tiler->SetInput(i, reader->GetOutput());</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span> </div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  tiler->Update();</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="comment">//std::cout << std::setprecision(9) << reader->GetOutput()->GetOrigin() << std::endl;</span></div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  m_MetaDataDictionaryArray.push_back(reader->GetMetaDataDictionary());</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  m_InvTimes.push_back(FindInversionTime(reader));</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  m_InvTimes20051572.push_back(FindInversionTime20051572(reader));</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  m_InvTimes00211189.push_back(FindInversionTime00211189(reader));</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  m_InvTimesFromImageComments.push_back(FindInversionTimeFromImageComments(reader));</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  m_RepTimes.push_back(FindRepetitionTime(reader));</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  m_EchoTimes.push_back(FindEchoTime(reader));</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  m_EchoTimes00191016.push_back(FindEchoTime00191016(reader));</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  m_EchoTimes00209158.push_back(FindEchoTime00209158(reader));</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  m_EchoTimesFromImageComments.push_back(FindEchoTimeFromImageComments(reader));</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  m_TriggerTimes.push_back(FindTriggerTime(reader));</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  m_AcqTimes.push_back(FindAcqTime(reader));</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  inputImageNumber++;</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  } <span class="keywordflow">catch</span>( itk::ExceptionObject & err ) {</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  std::cerr << <span class="stringliteral">"Unable to read file: "</span> << m_FileList[i] << std::endl;</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  std::cerr << <span class="stringliteral">"ExceptionObject caught!"</span> << std::endl << err << std::endl;</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  }</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  }</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keywordflow">if</span> (inputImageNumber == 0) <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  tiler->UpdateLargestPossibleRegion();</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="comment">// the final update</span></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  outputImage = tiler->GetOutput();</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="comment">//outputImage->SetOrigin(reader->GetOutput()->GetOrigin());</span></div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="comment">//outputImage->SetDirection(reader->GetOutput()->GetDirection());</span></div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  <span class="keywordflow">try</span> {</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  outputImage->Update();</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  } <span class="keywordflow">catch</span>( itk::ExceptionObject & err ) {</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  std::cerr << <span class="stringliteral">"ExceptionObject caught!"</span> << std::endl;</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  std::cerr << err << std::endl;</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  }</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> </div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keywordflow">if</span> (GetVerbose()) {</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keyword">typename</span> ImageType3D::PixelType rescaleIntercept = m_DicomIO->GetRescaleIntercept();</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="keyword">typename</span> ImageType3D::PixelType rescaleSlope = m_DicomIO->GetRescaleSlope();</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span> </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keyword">typedef</span> itk::StatisticsImageFilter<ImageType3D> StatisticsImageFilterType;</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <span class="keyword">typename</span> StatisticsImageFilterType::Pointer statisticsImageFilter</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  = StatisticsImageFilterType::New();</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  statisticsImageFilter->SetInput(outputImage);</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  statisticsImageFilter->Update();</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> </div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  std::cout << <span class="stringliteral">"Mean: "</span> << statisticsImageFilter->GetMean();</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  std::cout << <span class="stringliteral">", Std.: "</span> << statisticsImageFilter->GetSigma();</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  std::cout << <span class="stringliteral">", Min: "</span> << statisticsImageFilter->GetMinimum();</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  std::cout << <span class="stringliteral">", Max: "</span> << statisticsImageFilter->GetMaximum();</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> </div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  std::cout << <span class="stringliteral">", RescaleIntercept: "</span> << rescaleIntercept << <span class="stringliteral">", RescaleSlope: "</span> << rescaleSlope << std::endl;</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span> </div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="comment">//std::cout << outputImage << std::endl;</span></div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span> </div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  vcl_cout << <span class="stringliteral">"Inversion Times: "</span> << GetInvTimes() << vcl_endl;</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  vcl_cout << <span class="stringliteral">"Repetition Times: "</span> << GetRepTimes() << vcl_endl;</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  vcl_cout << <span class="stringliteral">"Echo Times: "</span> << GetEchoTimes() << vcl_endl;</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  vcl_cout << <span class="stringliteral">"Trigger Times: "</span> << GetTriggerTimes() << vcl_endl;</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  vcl_cout << <span class="stringliteral">"Rel Acq Times: "</span> << GetRelAcqTimes() << vcl_endl;</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  }</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> </div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  this->GraftOutput(outputImage);</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  }</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span> </div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  ::FindInversionTime(ReaderType* reader) {</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span> </div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordtype">double</span> invTime = 0;</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span> </div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span> </div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  std::string entryId = <span class="stringliteral">"0018|0082"</span>;</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span> </div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span> </div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  invTime = KWUtil::StringToNumber<double>(tagvalue);</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  }</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  }</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keywordflow">return</span> invTime;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  };</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span> </div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  ::FindInversionTime20051572(ReaderType* reader) {</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span> </div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  <span class="keywordtype">double</span> invTime = 0;</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span> </div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span> </div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  std::string entryId = <span class="stringliteral">"2005|1572"</span>;</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span> </div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span> </div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  std::string decoded;</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span> </div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="keywordtype">int</span> dlen = gdcm::Base64::GetDecodeLength(tagvalue.c_str(), tagvalue.size() );</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  decoded.resize(dlen);</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  gdcm::Base64::Decode(&decoded[0], decoded.size(), tagvalue.c_str(), tagvalue.size());</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  <span class="keywordtype">float</span> * fDecoded = (<span class="keywordtype">float</span> *)&decoded[0];</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  invTime = (double)(*fDecoded);</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  }</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  }</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="keywordflow">return</span> invTime;</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  };</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span> </div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  ::FindInversionTime00211189(ReaderType *reader) {</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span> </div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordtype">double</span> invTime = 0;</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span> </div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  std::vector<std::pair<int, int> > tags;</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  tags.push_back(std::pair<int, int>(0x5200, 0x9230));</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  tags.push_back(std::pair<int, int>(0x0021, 0x11fe));</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  tags.push_back(std::pair<int, int>(0x0021, 0x1189));</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span> </div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  std::string tagvalue;</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="keywordflow">if</span> (gdcmTomatoReadTags(tags, reader->GetFileName(), tagvalue) == 0) { <span class="comment">// EXIT_SUCCESS</span></div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  invTime = *(<span class="keywordtype">double</span>*)&tagvalue[0];</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  }</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> </div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keywordflow">return</span> invTime;</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  };</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span> </div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span> </div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  ::FindInversionTimeFromImageComments(ReaderType* reader) {</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span> </div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <span class="keywordtype">int</span> invTime = 0;</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span> </div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> </div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  std::string entryId = <span class="stringliteral">"0020|4000"</span>;</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span> </div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  MetaDataStringType::ConstPointer entryvalueStr = <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> </div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  std::sscanf(tagvalue.c_str(), <span class="stringliteral">"TIeff %i ms "</span>, &invTime);</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  }</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  }</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  <span class="keywordflow">return</span> (<span class="keywordtype">double</span>)invTime;</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  };</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  ::FindRepetitionTime(ReaderType* reader) {</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span> </div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <span class="keywordtype">double</span> repTime = 0;</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span> </div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span> </div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  std::string entryId = <span class="stringliteral">"0018|0080"</span>;</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> </div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  repTime = KWUtil::StringToNumber<double>(tagvalue);</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  }</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  }</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <span class="keywordflow">return</span> repTime;</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  };</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> </div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  ::FindEchoTime(ReaderType* reader) {</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> </div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  <span class="keywordtype">double</span> echoTime = 0;</div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span> </div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span> </div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  std::string entryId = <span class="stringliteral">"0018|0081"</span>;</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span> </div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  echoTime = KWUtil::StringToNumber<double>(tagvalue);</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  }</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  }</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <span class="keywordflow">return</span> echoTime;</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  };</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span> </div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  ::FindEchoTime00191016(ReaderType* reader) {</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> </div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  <span class="keywordtype">double</span> echoTime = 0;</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span> </div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span> </div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  std::string entryId = <span class="stringliteral">"0019|1016"</span>;</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span> </div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  echoTime = KWUtil::StringToNumber<double>(tagvalue);</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  }</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  }</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  <span class="keywordflow">return</span> echoTime;</div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  };</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> </div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  ::FindEchoTime00209158(ReaderType* reader) {</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span> </div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  <span class="keywordtype">int</span> echoTime = 0;</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span> </div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  std::vector<std::pair<int, int> > tags;</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  tags.push_back(std::pair<int, int>(0x5200, 0x9230));</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  tags.push_back(std::pair<int, int>(0x0020, 0x9111));</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  tags.push_back(std::pair<int, int>(0x0020, 0x9158));</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span> </div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  std::string tagvalue;</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <span class="keywordflow">if</span> ( gdcmTomatoReadTags(tags, reader->GetFileName(), tagvalue) == 0) { <span class="comment">// EXIT_SUCCESS</span></div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  std::sscanf(tagvalue.c_str(), <span class="stringliteral">"T2 prep. duration = %i ms"</span>, &echoTime);</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  }</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span> </div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  <span class="keywordflow">return</span> (<span class="keywordtype">double</span>)echoTime;</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  };</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span> </div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  ::FindEchoTimeFromImageComments(ReaderType* reader) {</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span> </div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <span class="keywordtype">int</span> echoTime = 0;</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> </div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span> </div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  std::string entryId = <span class="stringliteral">"0020|4000"</span>;</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span> </div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  MetaDataStringType::ConstPointer entryvalueStr = <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span> </div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  std::sscanf(tagvalue.c_str(), <span class="stringliteral">"T2 prep. duration = %i ms "</span>, &echoTime);</div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  }</div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  }</div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="keywordflow">return</span> (<span class="keywordtype">double</span>)echoTime;</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  };</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> </div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  ::FindTriggerTime(ReaderType* reader) {</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span> </div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <span class="keywordtype">double</span> triggerTime = 0;</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span> </div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span> </div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  std::string entryId = <span class="stringliteral">"0018|1060"</span>;</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span> </div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  triggerTime = KWUtil::StringToNumber<double>(tagvalue);</div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  }</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  }</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  <span class="keywordflow">return</span> triggerTime;</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  };</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span> </div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  <span class="keyword">template</span>< <span class="keyword">class</span> TImage></div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  ReadFileListFilter< TImage></div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  ::FindAcqTime(ReaderType* reader) {</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span> </div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  <span class="keywordtype">double</span> acqTime = 0;</div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span> </div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  <span class="keyword">const</span> DictionaryType & dictionary = reader->GetMetaDataDictionary();</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  DictionaryType::ConstIterator end = dictionary.End();</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span> </div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  std::string entryId = <span class="stringliteral">"0008|0032"</span>;</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  DictionaryType::ConstIterator tagItr = dictionary.Find(entryId);</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  <span class="keywordflow">if</span> ( tagItr != end ) {</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  MetaDataStringType::ConstPointer entryvalueStr =</div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  <span class="keyword">dynamic_cast<</span><span class="keyword">const </span>MetaDataStringType *<span class="keyword">></span>(tagItr->second.GetPointer());</div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span> </div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <span class="keywordflow">if</span> (entryvalueStr) {</div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  std::string tagvalue = entryvalueStr->GetMetaDataObjectValue();</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  acqTime = KWUtil::dicomTime2Seconds<double>(tagvalue);</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  }</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  }</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  <span class="keywordflow">return</span> acqTime;</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  }</div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span> </div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImage></div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  <span class="keyword">const</span> std::vector<std::string> &ReadFileListFilter<TImage>::GetFileList()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  <span class="keywordflow">return</span> m_FileList;</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  }</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span> </div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImage></div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  <span class="keyword">const</span> std::string &ReadFileListFilter<TImage>::GetDirName()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  <span class="keywordflow">return</span> m_DirName;</div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  }</div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span> </div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span> }</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span> </div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span> <span class="preprocessor">#endif // USE_ITK</span></div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span> <span class="preprocessor">#endif //TomatoLIB_ITKREADFILELISTFILTER_HXX</span></div>
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