swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
Tip revision: 26b818c
itk_sort_inv_times_image_filter_8h_source.html
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<div class="title">itkSortInvTimesImageFilter.h</div> </div>
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<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">//</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// itkOxSortInvTimesImageFilter</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// TomatoLib</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">//</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Created by Konrad Werys on 5/6/17.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// Copyright © 2017 Konrad Werys. All rights reserved.</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">//</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#ifndef TomatoLIB_ITKOXSORTINVTIMESIMAGEFILTER_H</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor"></span><span class="preprocessor">#define TomatoLIB_ITKOXSORTINVTIMESIMAGEFILTER_H</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "tomatolib_export.h"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "CmakeConfigForTomato.h"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#ifdef USE_ITK</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <vnl/vnl_index_sort.h></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> </div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "itkImageToImageFilter.h"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "itkImageLinearIteratorWithIndex.h"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">namespace </span>itk {</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="keyword">template</span><<span class="keyword">typename</span> TImageIn, <span class="keyword">typename</span> TImageOut></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keyword">class </span>SortInvTimesImageFilter : <span class="keyword">public</span> ImageToImageFilter<TImageIn, TImageOut> {</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="keyword">typedef</span> SortInvTimesImageFilter Self;</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="keyword">typedef</span> ImageToImageFilter<TImageIn, TImageOut> Superclass;</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="keyword">typedef</span> SmartPointer<Self> Pointer;</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  itkNewMacro(Self);</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  itkTypeMacro(OxSortInvTimesImageFilter, ImageToImageFilter);</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> TImageIn::PixelType PixelTypeIn;</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keyword">typedef</span> <span class="keyword">typename</span> TImageOut::PixelType PixelTypeOut;</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="keywordtype">void</span> SortIndices(vnl_vector<PixelTypeIn> vector);</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keywordtype">void</span> SortByInvTimes();</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keywordtype">void</span> SortByEchoTimes();</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keywordtype">void</span> SortByRepTimes();</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keywordtype">void</span> SortByTriggerTimes();</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="keywordtype">void</span> SortByAcqTimes();</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keywordtype">void</span> SortByRelAcqTimes();</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  itkSetMacro( InvTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  itkGetMacro( InvTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  itkGetMacro( InvTimesSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  itkSetMacro( EchoTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  itkGetMacro( EchoTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  itkGetMacro( EchoTimesSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  itkSetMacro( RepTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  itkGetMacro( RepTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  itkGetMacro( RepTimesSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  itkSetMacro( TriggerTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  itkGetMacro( TriggerTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  itkGetMacro( TriggerTimesSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  itkSetMacro( AcqTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  itkGetMacro( AcqTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  itkGetMacro( AcqTimesSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> </div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  itkSetMacro( RelAcqTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  itkGetMacro( RelAcqTimesNonSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  itkGetMacro( RelAcqTimesSorted, vnl_vector<PixelTypeIn> );</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  itkGetMacro( Indices, vnl_vector<int> );</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  SortInvTimesImageFilter() {</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  m_nSamples = 0;</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  };</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> </div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  ~SortInvTimesImageFilter() {};</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> GenerateData() ITK_OVERRIDE;</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  private:</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  ITK_DISALLOW_COPY_AND_ASSIGN(SortInvTimesImageFilter); <span class="comment">//purposely not implemented</span></div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  vnl_vector<typename TImageIn::PixelType> m_InvTimesNonSorted;</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  vnl_vector<typename TImageIn::PixelType> m_InvTimesSorted;</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  vnl_vector<typename TImageIn::PixelType> m_EchoTimesNonSorted;</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  vnl_vector<typename TImageIn::PixelType> m_EchoTimesSorted;</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  vnl_vector<typename TImageIn::PixelType> m_RepTimesNonSorted;</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  vnl_vector<typename TImageIn::PixelType> m_RepTimesSorted;</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  vnl_vector<typename TImageIn::PixelType> m_TriggerTimesNonSorted;</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  vnl_vector<typename TImageIn::PixelType> m_TriggerTimesSorted;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  vnl_vector<typename TImageIn::PixelType> m_AcqTimesNonSorted;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  vnl_vector<typename TImageIn::PixelType> m_AcqTimesSorted;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  vnl_vector<typename TImageIn::PixelType> m_RelAcqTimesNonSorted;</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  vnl_vector<typename TImageIn::PixelType> m_RelAcqTimesSorted;</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  vnl_vector<<span class="keywordtype">int</span>> m_Indices;</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keywordtype">size_t</span> m_nSamples;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  };</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> } <span class="comment">//namespace ITK</span></div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> <span class="preprocessor">#ifndef TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> <span class="preprocessor"></span><span class="preprocessor">#ifndef ITK_MANUAL_INSTANTIATION</span></div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> <span class="preprocessor"></span><span class="preprocessor">#include "itkSortInvTimesImageFilter.txx"</span></div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> <span class="preprocessor">#endif //ITK_MANUAL_INSTANTIATION</span></div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span> <span class="preprocessor"></span><span class="preprocessor">#endif //TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <span class="preprocessor">#endif //USE_ITK</span></div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> <span class="preprocessor">#endif //TomatoLIB_ITKOXSORTINVTIMESIMAGEFILTER_H</span></div>
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