swh:1:snp:f521c49ab17ef7db6ec70b2430e1ed203f50383f
Tip revision: 1730ee2a1f671b6346998039cdc42a55e6ad4557 authored by Lars Bilke on 08 March 2021, 15:02:57 UTC
Merge branch 'web-additions' into 'master'
Merge branch 'web-additions' into 'master'
Tip revision: 1730ee2
ThermoMechanicsProcess.cpp
/**
* \file
* \copyright
* Copyright (c) 2012-2021, OpenGeoSys Community (http://www.opengeosys.org)
* Distributed under a Modified BSD License.
* See accompanying file LICENSE.txt or
* http://www.opengeosys.org/project/license
*
*/
#include "ThermoMechanicsProcess.h"
#include <cassert>
#include "NumLib/DOF/ComputeSparsityPattern.h"
#include "NumLib/DOF/DOFTableUtil.h"
#include "ProcessLib/Deformation/SolidMaterialInternalToSecondaryVariables.h"
#include "ProcessLib/Output/IntegrationPointWriter.h"
#include "ProcessLib/SmallDeformation/CreateLocalAssemblers.h"
#include "ThermoMechanicsFEM.h"
namespace ProcessLib
{
namespace ThermoMechanics
{
template <int DisplacementDim>
ThermoMechanicsProcess<DisplacementDim>::ThermoMechanicsProcess(
std::string name, MeshLib::Mesh& mesh,
std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
std::vector<std::unique_ptr<ParameterLib::ParameterBase>> const& parameters,
unsigned const integration_order,
std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>&&
process_variables,
ThermoMechanicsProcessData<DisplacementDim>&& process_data,
SecondaryVariableCollection&& secondary_variables,
bool const use_monolithic_scheme)
: Process(std::move(name), mesh, std::move(jacobian_assembler), parameters,
integration_order, std::move(process_variables),
std::move(secondary_variables), use_monolithic_scheme),
_process_data(std::move(process_data))
{
_nodal_forces = MeshLib::getOrCreateMeshProperty<double>(
mesh, "NodalForces", MeshLib::MeshItemType::Node, DisplacementDim);
_heat_flux = MeshLib::getOrCreateMeshProperty<double>(
mesh, "HeatFlux", MeshLib::MeshItemType::Node, 1);
_integration_point_writer.emplace_back(
std::make_unique<IntegrationPointWriter>(
"sigma_ip",
static_cast<int>(mesh.getDimension() == 2 ? 4 : 6) /*n components*/,
integration_order, [this]() {
// Result containing integration point data for each local
// assembler.
std::vector<std::vector<double>> result;
result.resize(_local_assemblers.size());
for (std::size_t i = 0; i < _local_assemblers.size(); ++i)
{
auto const& local_asm = *_local_assemblers[i];
result[i] = local_asm.getSigma();
}
return result;
}));
_integration_point_writer.emplace_back(
std::make_unique<IntegrationPointWriter>(
"epsilon_ip",
static_cast<int>(mesh.getDimension() == 2 ? 4 : 6) /*n components*/,
integration_order, [this]() {
// Result containing integration point data for each local
// assembler.
std::vector<std::vector<double>> result;
result.resize(_local_assemblers.size());
for (std::size_t i = 0; i < _local_assemblers.size(); ++i)
{
auto const& local_asm = *_local_assemblers[i];
result[i] = local_asm.getEpsilon();
}
return result;
}));
_integration_point_writer.emplace_back(
std::make_unique<IntegrationPointWriter>(
"epsilon_m_ip",
static_cast<int>(mesh.getDimension() == 2 ? 4 : 6) /*n components*/,
integration_order, [this]() {
// Result containing integration point data for each local
// assembler.
std::vector<std::vector<double>> result;
result.resize(_local_assemblers.size());
for (std::size_t i = 0; i < _local_assemblers.size(); ++i)
{
auto const& local_asm = *_local_assemblers[i];
result[i] = local_asm.getEpsilonMechanical();
}
return result;
}));
}
template <int DisplacementDim>
bool ThermoMechanicsProcess<DisplacementDim>::isLinear() const
{
return false;
}
template <int DisplacementDim>
MathLib::MatrixSpecifications
ThermoMechanicsProcess<DisplacementDim>::getMatrixSpecifications(
const int process_id) const
{
// For the monolithic scheme or the M process (deformation) in the staggered
// scheme.
if (_use_monolithic_scheme ||
process_id == _process_data.mechanics_process_id)
{
auto const& l = *_local_to_global_index_map;
return {l.dofSizeWithoutGhosts(), l.dofSizeWithoutGhosts(),
&l.getGhostIndices(), &this->_sparsity_pattern};
}
// For staggered scheme and T process.
auto const& l = *_local_to_global_index_map_single_component;
return {l.dofSizeWithoutGhosts(), l.dofSizeWithoutGhosts(),
&l.getGhostIndices(), &_sparsity_pattern_with_single_component};
}
// TODO [WW]: remove if (_use_monolithic_scheme) during the refactoring of the
// coupling part.
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::constructDofTable()
{
// Note: the heat conduction process and the mechanical process use the same
// order of shape functions.
if (_use_monolithic_scheme)
{
constructMonolithicProcessDofTable();
return;
}
constructDofTableOfSpecifiedProsessStaggeredScheme(
_process_data.mechanics_process_id);
// TODO move the two data members somewhere else.
// for extrapolation of secondary variables of stress or strain
std::vector<MeshLib::MeshSubset> all_mesh_subsets_single_component{
*_mesh_subset_all_nodes};
_local_to_global_index_map_single_component.reset(
new NumLib::LocalToGlobalIndexMap(
std::move(all_mesh_subsets_single_component),
// by location order is needed for output
NumLib::ComponentOrder::BY_LOCATION));
if (!_use_monolithic_scheme)
{
_sparsity_pattern_with_single_component =
NumLib::computeSparsityPattern(
*_local_to_global_index_map_single_component, _mesh);
}
}
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::initializeConcreteProcess(
NumLib::LocalToGlobalIndexMap const& dof_table,
MeshLib::Mesh const& mesh,
unsigned const integration_order)
{
ProcessLib::SmallDeformation::createLocalAssemblers<
DisplacementDim, ThermoMechanicsLocalAssembler>(
mesh.getElements(), dof_table, _local_assemblers,
mesh.isAxiallySymmetric(), integration_order, _process_data);
auto add_secondary_variable = [&](std::string const& name,
int const num_components,
auto get_ip_values_function) {
_secondary_variables.addSecondaryVariable(
name,
makeExtrapolator(num_components, getExtrapolator(),
_local_assemblers,
std::move(get_ip_values_function)));
};
add_secondary_variable("sigma",
MathLib::KelvinVector::KelvinVectorType<
DisplacementDim>::RowsAtCompileTime,
&LocalAssemblerInterface::getIntPtSigma);
add_secondary_variable("epsilon",
MathLib::KelvinVector::KelvinVectorType<
DisplacementDim>::RowsAtCompileTime,
&LocalAssemblerInterface::getIntPtEpsilon);
//
// enable output of internal variables defined by material models
//
ProcessLib::Deformation::solidMaterialInternalToSecondaryVariables<
LocalAssemblerInterface>(_process_data.solid_materials,
add_secondary_variable);
// Set initial conditions for integration point data.
for (auto const& ip_writer : _integration_point_writer)
{
// Find the mesh property with integration point writer's name.
auto const& name = ip_writer->name();
if (!mesh.getProperties().existsPropertyVector<double>(name))
{
continue;
}
auto const& mesh_property =
*mesh.getProperties().template getPropertyVector<double>(name);
// The mesh property must be defined on integration points.
if (mesh_property.getMeshItemType() !=
MeshLib::MeshItemType::IntegrationPoint)
{
continue;
}
auto const ip_meta_data = getIntegrationPointMetaData(mesh, name);
// Check the number of components.
if (ip_meta_data.n_components !=
mesh_property.getNumberOfGlobalComponents())
{
OGS_FATAL(
"Different number of components in meta data ({:d}) than in "
"the integration point field data for '{:s}': {:d}.",
ip_meta_data.n_components, name,
mesh_property.getNumberOfGlobalComponents());
}
// Now we have a properly named vtk's field data array and the
// corresponding meta data.
std::size_t position = 0;
for (auto& local_asm : _local_assemblers)
{
std::size_t const integration_points_read =
local_asm->setIPDataInitialConditions(
name, &mesh_property[position],
ip_meta_data.integration_order);
if (integration_points_read == 0)
{
OGS_FATAL(
"No integration points read in the integration point "
"initial conditions set function.");
}
position += integration_points_read * ip_meta_data.n_components;
}
}
// Initialize local assemblers after all variables have been set.
GlobalExecutor::executeMemberOnDereferenced(
&LocalAssemblerInterface::initialize, _local_assemblers,
*_local_to_global_index_map);
}
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::initializeBoundaryConditions()
{
if (_use_monolithic_scheme)
{
const int process_id_of_thermomechanics = 0;
initializeProcessBoundaryConditionsAndSourceTerms(
*_local_to_global_index_map, process_id_of_thermomechanics);
return;
}
// Staggered scheme:
// for the equations of heat conduction
initializeProcessBoundaryConditionsAndSourceTerms(
*_local_to_global_index_map_single_component,
_process_data.heat_conduction_process_id);
// for the equations of deformation.
initializeProcessBoundaryConditionsAndSourceTerms(
*_local_to_global_index_map, _process_data.mechanics_process_id);
}
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::assembleConcreteProcess(
const double t, double const dt, std::vector<GlobalVector*> const& x,
std::vector<GlobalVector*> const& xdot, int const process_id,
GlobalMatrix& M, GlobalMatrix& K, GlobalVector& b)
{
DBUG("Assemble ThermoMechanicsProcess.");
std::vector<std::reference_wrapper<NumLib::LocalToGlobalIndexMap>>
dof_table = {std::ref(*_local_to_global_index_map)};
ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
// Call global assembler for each local assembly item.
GlobalExecutor::executeSelectedMemberDereferenced(
_global_assembler, &VectorMatrixAssembler::assemble, _local_assemblers,
pv.getActiveElementIDs(), dof_table, t, dt, x, xdot, process_id, M, K,
b);
}
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::
assembleWithJacobianConcreteProcess(
const double t, double const dt, std::vector<GlobalVector*> const& x,
std::vector<GlobalVector*> const& xdot, const double dxdot_dx,
const double dx_dx, int const process_id, GlobalMatrix& M,
GlobalMatrix& K, GlobalVector& b, GlobalMatrix& Jac)
{
DBUG("AssembleJacobian ThermoMechanicsProcess.");
std::vector<std::reference_wrapper<NumLib::LocalToGlobalIndexMap>>
dof_tables;
// For the monolithic scheme
if (_use_monolithic_scheme)
{
DBUG(
"Assemble the Jacobian of ThermoMechanics for the monolithic"
" scheme.");
dof_tables.emplace_back(*_local_to_global_index_map);
}
else
{
// For the staggered scheme
if (process_id == _process_data.heat_conduction_process_id)
{
DBUG(
"Assemble the Jacobian equations of heat conduction process in "
"ThermoMechanics for the staggered scheme.");
}
else
{
DBUG(
"Assemble the Jacobian equations of mechanical process in "
"ThermoMechanics for the staggered scheme.");
}
// For the flexible appearance order of processes in the coupling.
if (_process_data.heat_conduction_process_id ==
0) // First: the heat conduction process
{
dof_tables.emplace_back(
*_local_to_global_index_map_single_component);
dof_tables.emplace_back(*_local_to_global_index_map);
}
else // vice versa
{
dof_tables.emplace_back(*_local_to_global_index_map);
dof_tables.emplace_back(
*_local_to_global_index_map_single_component);
}
}
ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
GlobalExecutor::executeSelectedMemberDereferenced(
_global_assembler, &VectorMatrixAssembler::assembleWithJacobian,
_local_assemblers, pv.getActiveElementIDs(), dof_tables, t, dt, x, xdot,
dxdot_dx, dx_dx, process_id, M, K, b, Jac);
// TODO (naumov): Refactor the copy rhs part. This is copy from HM.
auto copyRhs = [&](int const variable_id, auto& output_vector) {
if (_use_monolithic_scheme)
{
transformVariableFromGlobalVector(b, variable_id, dof_tables[0],
output_vector,
std::negate<double>());
}
else
{
transformVariableFromGlobalVector(b, 0, dof_tables[process_id],
output_vector,
std::negate<double>());
}
};
if (_use_monolithic_scheme ||
process_id == _process_data.heat_conduction_process_id)
{
copyRhs(0, *_heat_flux);
}
if (_use_monolithic_scheme ||
process_id == _process_data.mechanics_process_id)
{
copyRhs(1, *_nodal_forces);
}
}
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::preTimestepConcreteProcess(
std::vector<GlobalVector*> const& x, double const t, double const dt,
const int process_id)
{
DBUG("PreTimestep ThermoMechanicsProcess.");
ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
assert(process_id < 2);
if (process_id == _process_data.mechanics_process_id)
{
GlobalExecutor::executeSelectedMemberOnDereferenced(
&LocalAssemblerInterface::preTimestep, _local_assemblers,
pv.getActiveElementIDs(), *_local_to_global_index_map,
*x[process_id], t, dt);
return;
}
}
template <int DisplacementDim>
void ThermoMechanicsProcess<DisplacementDim>::postTimestepConcreteProcess(
std::vector<GlobalVector*> const& x, double const t, double const dt,
int const process_id)
{
if (process_id != 0)
{
return;
}
DBUG("PostTimestep ThermoMechanicsProcess.");
std::vector<NumLib::LocalToGlobalIndexMap const*> dof_tables;
auto const n_processes = x.size();
dof_tables.reserve(n_processes);
for (std::size_t process_id = 0; process_id < n_processes; ++process_id)
{
dof_tables.push_back(&getDOFTable(process_id));
}
ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
GlobalExecutor::executeSelectedMemberOnDereferenced(
&LocalAssemblerInterface::postTimestep, _local_assemblers,
pv.getActiveElementIDs(), dof_tables, x, t, dt);
}
template <int DisplacementDim>
NumLib::LocalToGlobalIndexMap const&
ThermoMechanicsProcess<DisplacementDim>::getDOFTable(const int process_id) const
{
if (_process_data.mechanics_process_id == process_id)
{
return *_local_to_global_index_map;
}
// For the equation of pressure
return *_local_to_global_index_map_single_component;
}
template class ThermoMechanicsProcess<2>;
template class ThermoMechanicsProcess<3>;
} // namespace ThermoMechanics
} // namespace ProcessLib