swh:1:snp:f521c49ab17ef7db6ec70b2430e1ed203f50383f
Tip revision: 8e627860f0d1264b8ca8be4f611457f0ebe3667c authored by Lars Bilke on 05 April 2021, 19:15:56 UTC
Merge branch 'fix-link-checker' into 'master'
Merge branch 'fix-link-checker' into 'master'
Tip revision: 8e62786
RichardsFlowFEM.h
/**
* \file
* \copyright
* Copyright (c) 2012-2021, OpenGeoSys Community (http://www.opengeosys.org)
* Distributed under a Modified BSD License.
* See accompanying file LICENSE.txt or
* http://www.opengeosys.org/project/license
*
*/
#pragma once
#include <vector>
#include "MaterialLib/MPL/MaterialSpatialDistributionMap.h"
#include "MaterialLib/MPL/Medium.h"
#include "MaterialLib/MPL/Utils/FormEigenTensor.h"
#include "MaterialLib/MPL/VariableType.h"
#include "MathLib/InterpolationAlgorithms/PiecewiseLinearInterpolation.h"
#include "MathLib/LinAlg/Eigen/EigenMapTools.h"
#include "NumLib/DOF/DOFTableUtil.h"
#include "NumLib/Extrapolation/ExtrapolatableElement.h"
#include "NumLib/Fem/FiniteElement/TemplateIsoparametric.h"
#include "NumLib/Fem/InitShapeMatrices.h"
#include "NumLib/Fem/ShapeMatrixPolicy.h"
#include "NumLib/Function/Interpolation.h"
#include "ParameterLib/Parameter.h"
#include "ProcessLib/LocalAssemblerInterface.h"
#include "ProcessLib/LocalAssemblerTraits.h"
#include "RichardsFlowProcessData.h"
namespace ProcessLib
{
namespace RichardsFlow
{
template <typename NodalRowVectorType, typename GlobalDimNodalMatrixType,
typename NodalMatrixType>
struct IntegrationPointData final
{
IntegrationPointData(NodalRowVectorType const& N_,
GlobalDimNodalMatrixType const& dNdx_,
double const& integration_weight_,
NodalMatrixType const mass_operator_)
: N(N_),
dNdx(dNdx_),
integration_weight(integration_weight_),
mass_operator(mass_operator_)
{
}
NodalRowVectorType const N;
GlobalDimNodalMatrixType const dNdx;
double const integration_weight;
NodalMatrixType const mass_operator;
EIGEN_MAKE_ALIGNED_OPERATOR_NEW;
};
const unsigned NUM_NODAL_DOF = 1;
class RichardsFlowLocalAssemblerInterface
: public ProcessLib::LocalAssemblerInterface,
public NumLib::ExtrapolatableElement
{
public:
virtual std::vector<double> const& getIntPtSaturation(
const double t,
std::vector<GlobalVector*> const& x,
std::vector<NumLib::LocalToGlobalIndexMap const*> const& dof_table,
std::vector<double>& cache) const = 0;
virtual std::vector<double> const& getIntPtDarcyVelocity(
const double t,
std::vector<GlobalVector*> const& x,
std::vector<NumLib::LocalToGlobalIndexMap const*> const& dof_table,
std::vector<double>& cache) const = 0;
};
template <typename ShapeFunction, typename IntegrationMethod,
unsigned GlobalDim>
class LocalAssemblerData : public RichardsFlowLocalAssemblerInterface
{
using ShapeMatricesType = ShapeMatrixPolicyType<ShapeFunction, GlobalDim>;
using ShapeMatrices = typename ShapeMatricesType::ShapeMatrices;
using LocalAssemblerTraits = ProcessLib::LocalAssemblerTraits<
ShapeMatricesType, ShapeFunction::NPOINTS, NUM_NODAL_DOF, GlobalDim>;
using NodalRowVectorType = typename ShapeMatricesType::NodalRowVectorType;
using GlobalDimNodalMatrixType =
typename ShapeMatricesType::GlobalDimNodalMatrixType;
using NodalMatrixType = typename ShapeMatricesType::NodalMatrixType;
using NodalVectorType = typename ShapeMatricesType::NodalVectorType;
using GlobalDimMatrixType = typename ShapeMatricesType::GlobalDimMatrixType;
using GlobalDimVectorType = typename ShapeMatricesType::GlobalDimVectorType;
public:
LocalAssemblerData(MeshLib::Element const& element,
std::size_t const local_matrix_size,
bool is_axially_symmetric,
unsigned const integration_order,
RichardsFlowProcessData const& process_data)
: _element(element),
_process_data(process_data),
_integration_method(integration_order),
_saturation(
std::vector<double>(_integration_method.getNumberOfPoints()))
{
// This assertion is valid only if all nodal d.o.f. use the same shape
// matrices.
assert(local_matrix_size == ShapeFunction::NPOINTS * NUM_NODAL_DOF);
(void)local_matrix_size;
unsigned const n_integration_points =
_integration_method.getNumberOfPoints();
_ip_data.reserve(n_integration_points);
auto const shape_matrices =
NumLib::initShapeMatrices<ShapeFunction, ShapeMatricesType,
GlobalDim>(element, is_axially_symmetric,
_integration_method);
for (unsigned ip = 0; ip < n_integration_points; ip++)
{
auto const& sm = shape_matrices[ip];
const double integration_factor = sm.integralMeasure * sm.detJ;
_ip_data.emplace_back(
sm.N, sm.dNdx,
_integration_method.getWeightedPoint(ip).getWeight() *
integration_factor,
sm.N.transpose() * sm.N * integration_factor *
_integration_method.getWeightedPoint(ip).getWeight());
}
}
void assemble(double const t, double const dt,
std::vector<double> const& local_x,
std::vector<double> const& /*local_xdot*/,
std::vector<double>& local_M_data,
std::vector<double>& local_K_data,
std::vector<double>& local_b_data) override
{
auto const local_matrix_size = local_x.size();
// This assertion is valid only if all nodal d.o.f. use the same shape
// matrices.
assert(local_matrix_size == ShapeFunction::NPOINTS * NUM_NODAL_DOF);
auto local_M = MathLib::createZeroedMatrix<NodalMatrixType>(
local_M_data, local_matrix_size, local_matrix_size);
auto local_K = MathLib::createZeroedMatrix<NodalMatrixType>(
local_K_data, local_matrix_size, local_matrix_size);
auto local_b = MathLib::createZeroedVector<NodalVectorType>(
local_b_data, local_matrix_size);
unsigned const n_integration_points =
_integration_method.getNumberOfPoints();
ParameterLib::SpatialPosition pos;
pos.setElementID(_element.getID());
auto const& medium =
*_process_data.media_map->getMedium(_element.getID());
auto const& liquid_phase = medium.phase("AqueousLiquid");
MaterialPropertyLib::VariableArray vars;
vars[static_cast<int>(MaterialPropertyLib::Variable::temperature)] =
medium
.property(
MaterialPropertyLib::PropertyType::reference_temperature)
.template value<double>(vars, pos, t, dt);
for (unsigned ip = 0; ip < n_integration_points; ip++)
{
pos.setIntegrationPoint(ip);
double p_int_pt = 0.0;
NumLib::shapeFunctionInterpolate(local_x, _ip_data[ip].N, p_int_pt);
vars[static_cast<int>(
MaterialPropertyLib::Variable::phase_pressure)] = p_int_pt;
vars[static_cast<int>(
MaterialPropertyLib::Variable::capillary_pressure)] = -p_int_pt;
auto const permeability =
MaterialPropertyLib::formEigenTensor<GlobalDim>(
medium.property(MaterialPropertyLib::permeability)
.value(vars, pos, t, dt));
auto const porosity =
medium.property(MaterialPropertyLib::PropertyType::porosity)
.template value<double>(vars, pos, t, dt);
double const Sw =
medium
.property(MaterialPropertyLib::PropertyType::saturation)
.template value<double>(vars, pos, t, dt);
_saturation[ip] = Sw;
vars[static_cast<int>(
MaterialPropertyLib::Variable::liquid_saturation)] = Sw;
double const dSw_dpc =
medium
.property(MaterialPropertyLib::PropertyType::saturation)
.template dValue<double>(
vars, MaterialPropertyLib::Variable::capillary_pressure,
pos, t, dt);
auto const drhow_dp =
liquid_phase
.property(MaterialPropertyLib::PropertyType::density)
.template dValue<double>(
vars, MaterialPropertyLib::Variable::phase_pressure,
pos, t, dt);
auto const storage =
medium.property(MaterialPropertyLib::PropertyType::storage)
.template value<double>(vars, pos, t, dt);
double const mass_mat_coeff =
storage * Sw + porosity * Sw * drhow_dp - porosity * dSw_dpc;
local_M.noalias() += mass_mat_coeff * _ip_data[ip].mass_operator;
double const k_rel =
medium
.property(MaterialPropertyLib::PropertyType::
relative_permeability)
.template value<double>(vars, pos, t, dt);
auto const mu =
liquid_phase.property(MaterialPropertyLib::viscosity)
.template value<double>(vars, pos, t, dt);
local_K.noalias() += _ip_data[ip].dNdx.transpose() * permeability *
_ip_data[ip].dNdx *
_ip_data[ip].integration_weight * (k_rel / mu);
if (_process_data.has_gravity)
{
auto const rho_w =
liquid_phase
.property(MaterialPropertyLib::PropertyType::density)
.template value<double>(vars, pos, t, dt);
auto const& body_force = _process_data.specific_body_force;
assert(body_force.size() == GlobalDim);
NodalVectorType gravity_operator =
_ip_data[ip].dNdx.transpose() * permeability * body_force *
_ip_data[ip].integration_weight;
local_b.noalias() += (k_rel / mu) * rho_w * gravity_operator;
}
}
if (_process_data.has_mass_lumping)
{
for (int idx_ml = 0; idx_ml < local_M.cols(); idx_ml++)
{
double const mass_lump_val = local_M.col(idx_ml).sum();
local_M.col(idx_ml).setZero();
local_M(idx_ml, idx_ml) = mass_lump_val;
}
} // end of mass lumping
}
Eigen::Map<const Eigen::RowVectorXd> getShapeMatrix(
const unsigned integration_point) const override
{
auto const& N = _ip_data[integration_point].N;
// assumes N is stored contiguously in memory
return Eigen::Map<const Eigen::RowVectorXd>(N.data(), N.size());
}
std::vector<double> const& getIntPtSaturation(
const double /*t*/,
std::vector<GlobalVector*> const& /*x*/,
std::vector<NumLib::LocalToGlobalIndexMap const*> const& /*dof_table*/,
std::vector<double>& /*cache*/) const override
{
assert(!_saturation.empty());
return _saturation;
}
std::vector<double> const& getIntPtDarcyVelocity(
const double t,
std::vector<GlobalVector*> const& x,
std::vector<NumLib::LocalToGlobalIndexMap const*> const& dof_table,
std::vector<double>& cache) const override
{
// TODO (tf) Temporary value not used by current material models. Need
// extension of secondary variable interface
double const dt = std::numeric_limits<double>::quiet_NaN();
constexpr int process_id = 0; // monolithic scheme.
auto const indices =
NumLib::getIndices(_element.getID(), *dof_table[process_id]);
assert(!indices.empty());
auto const local_x = x[process_id]->get(indices);
ParameterLib::SpatialPosition pos;
pos.setElementID(_element.getID());
auto const& medium =
*_process_data.media_map->getMedium(_element.getID());
auto const& liquid_phase = medium.phase("AqueousLiquid");
MaterialPropertyLib::VariableArray vars;
vars[static_cast<int>(MaterialPropertyLib::Variable::temperature)] =
medium
.property(
MaterialPropertyLib::PropertyType::reference_temperature)
.template value<double>(vars, pos, t, dt);
auto const p_nodal_values = Eigen::Map<const NodalVectorType>(
&local_x[0], ShapeFunction::NPOINTS);
unsigned const n_integration_points =
_integration_method.getNumberOfPoints();
cache.clear();
auto cache_vec = MathLib::createZeroedMatrix<
Eigen::Matrix<double, GlobalDim, Eigen::Dynamic, Eigen::RowMajor>>(
cache, GlobalDim, n_integration_points);
for (unsigned ip = 0; ip < n_integration_points; ++ip)
{
double p_int_pt = 0.0;
NumLib::shapeFunctionInterpolate(local_x, _ip_data[ip].N, p_int_pt);
vars[static_cast<int>(
MaterialPropertyLib::Variable::phase_pressure)] = p_int_pt;
vars[static_cast<int>(
MaterialPropertyLib::Variable::capillary_pressure)] = -p_int_pt;
double const Sw =
medium
.property(MaterialPropertyLib::PropertyType::saturation)
.template value<double>(vars, pos, t, dt);
vars[static_cast<int>(
MaterialPropertyLib::Variable::liquid_saturation)] = Sw;
auto const permeability =
MaterialPropertyLib::formEigenTensor<GlobalDim>(
medium.property(MaterialPropertyLib::permeability)
.value(vars, pos, t, dt));
double const k_rel =
medium
.property(MaterialPropertyLib::PropertyType::
relative_permeability)
.template value<double>(vars, pos, t, dt);
auto const mu =
liquid_phase.property(MaterialPropertyLib::viscosity)
.template value<double>(vars, pos, t, dt);
auto const K_mat_coeff = permeability * (k_rel / mu);
cache_vec.col(ip).noalias() =
-K_mat_coeff * _ip_data[ip].dNdx * p_nodal_values;
if (_process_data.has_gravity)
{
auto const rho_w =
liquid_phase
.property(MaterialPropertyLib::PropertyType::density)
.template value<double>(vars, pos, t, dt);
auto const& body_force = _process_data.specific_body_force;
assert(body_force.size() == GlobalDim);
// here it is assumed that the vector body_force is directed
// 'downwards'
cache_vec.col(ip).noalias() += K_mat_coeff * rho_w * body_force;
}
}
return cache;
}
private:
MeshLib::Element const& _element;
RichardsFlowProcessData const& _process_data;
IntegrationMethod const _integration_method;
std::vector<
IntegrationPointData<NodalRowVectorType, GlobalDimNodalMatrixType,
NodalMatrixType>,
Eigen::aligned_allocator<IntegrationPointData<
NodalRowVectorType, GlobalDimNodalMatrixType, NodalMatrixType>>>
_ip_data;
std::vector<double> _saturation;
};
} // namespace RichardsFlow
} // namespace ProcessLib