__pycache__/
*.egg-info/
# PyCharm
.idea/
# files generated by tests
yaml2sbml/tests/test_yaml2sbml/sbml_test.xml
# Documentation build
/doc/build
### Files generated when running the notebooks (AMICI + PEtab files)
## Lotka Volterra Python
./doc/examples/Lotka_Volterra/Lotka_Volterra_python/amici_models
./doc/examples/Lotka_Volterra/Lotka_Volterra_python/amici_models/*
./doc/examples/Lotka_Volterra/Lotka_Volterra_python/Lotka_Volterra_AMICI
./doc/examples/Lotka_Volterra/Lotka_Volterra_python/Lotka_Volterra_AMICI/*
./doc/examples/Lotka_Volterra/Lotka_Volterra_python/Lotka_Volterra_basic.xml
./doc/examples/Lotka_Volterra/Lotka_Volterra_python/Lotka_Volterra_PEtab/*
!./doc/examples/Lotka_Volterra/Lotka_Volterra_python/Lotka_Volterra_PEtab/measurement_table.tsv
## Lotka Volterra CLI
./doc/examples/Lotka_Volterra/Lotka_Volterra_CLI/Lotka_Volterra_PEtab/*
./doc/examples/Lotka_Volterra/Lotka_Volterra_CLI/Lotka_Volterra_PEtab.yml
./doc/examples/Lotka_Volterra/Lotka_Volterra_CLI/Lotka_Volterra_PEtab/*.xml
## Lotka Volterra Model Editor
./doc/examples/Lotka_Volterra/Lotka_Volterra_Model_Editor/*.yaml
./doc/examples/Lotka_Volterra/Lotka_Volterra_Model_Editor/*.xml
./doc/examples/Lotka_Volterra/Lotka_Volterra_Model_Editor/Lotka_Volterra_PEtab
## Sorensen example
./doc/examples/Sorensen/*.xml
./doc/examples/Sorensen/amici_models
## FSP examples
./doc/examples/Finite_State_Projection/amici_models
./doc/examples/Finite_State_Projection/*.xml
## Format Features
./doc/examples/Format_Features/__pycache__
./doc/examples/Format_Features/AMICI_models
./doc/examples/Format_Features/*.xml
### JupyterNotebooks ###
# gitignore template for Jupyter Notebooks
# website: http://jupyter.org/
.ipynb_checkpoints
*/.ipynb_checkpoints/*
# IPython
profile_default/
ipython_config.py
# Remove previous ipynb_checkpoints
# git rm -r .ipynb_checkpoints/
### macOS ###
# General
.DS_Store
.AppleDouble
.LSOverride
# Icon must end with two \r
Icon
# Thumbnails
._*
# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk
# Gradle and Maven with auto-import
# When using Gradle or Maven with auto-import, you should exclude module files,
# since they will be recreated, and may cause churn. Uncomment if using
# auto-import.
# .idea/artifacts
# .idea/compiler.xml
# .idea/jarRepositories.xml
# .idea/modules.xml
# .idea/*.iml
# .idea/modules
# *.iml
# *.ipr
# CMake
cmake-build-*/
# File-based project format
*.iws
# IntelliJ
out/
# mpeltonen/sbt-idea plugin
.idea_modules/
# JIRA plugin
atlassian-ide-plugin.xml
# Crashlytics plugin (for Android Studio and IntelliJ)
com_crashlytics_export_strings.xml
crashlytics.properties
crashlytics-build.properties
fabric.properties
# vim
*.swp
# tox
/.tox
# coverage
/.coverage
/htmlcov
/coverage.xml