# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r
language: r
sudo: required
cache: packages
os:
- linux
- osx
r:
- release
- devel
matrix:
exclude:
- r: devel
os: osx
env:
global:
- _R_CHECK_FORCE_SUGGESTS_=FALSE
- ASAN="-fsanitize=address -fno-omit-frame-pointer"
- LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
- HDF5_VERSION=1.8.17
- HDF5_RELEASE_URL="https://support.hdfgroup.org/ftp/HDF5/releases"
before_install:
- chmod +x travis_setup.sh
- ./travis_setup.sh
addons:
apt:
packages:
- subversion
- autoconf
- build-essential
- libtool
- libmagick++-dev
homebrew:
packages:
- libgit2
#bioc_packages:
# - GenomeInfoDbData
# - DESeq2
# - MAST
# - S4Vectors
# - SummarizedExperiment
# - SingleCellExperiment
r_github_packages:
- mojaveazure/loomR
warnings_are_errors: false