#PBS -l select=1:ncpus=1:mem=2gb
#PBS -l walltime=1:00:00
start=$SECONDS
module load anaconda3/personal
source activate
conda activate insertion_site_analysis
cd /rds/general/project/bacterial_evo_genomics/live/gps_annotations_4_2_2020/gps_gubbins_runs
echo $PWD
python ./ISA/python/running_act_comparisons.py --csv missing_act_csv.csv \
--perl_dir ./ISA/perl/ --act_dir ./act_compos_all_refs/
duration=$(( SECONDS - start ))
echo $duration > act_comparison_time_missing.txt