.tree = (((sjm180:0.0400823,els:0.0217168):0.0344596,gambia:0.0652494):0.0217168,(puno:0.064641,g27:0.0526246):0.008389);
.target = sjm180
.blocks = 5000, 500, 100

*.circular = true

els.fasta = references/ELS37.fasta
g27.fasta = references/G27.fasta
gambia.fasta = references/Gambia94_24.fasta
puno.fasta = references/Puno120.fasta
sjm180.fasta = SJM180_contigs.fasta