# from sp:
.index2list = function(x, returnList) {
if (returnList) {
l = lapply(1:length(x), function(x) { integer(0) })
notNA = !is.na(x)
l[notNA] = x[notNA]
l
} else
x
}
over.xts = function(x, y, returnList = FALSE, fn = NULL, ...) {
ix = index(x)
iy = index(y)
if (returnList) { # get all matches:
tm = timeMatch(ix, iy, returnList = TRUE)
stopifnot(is.null(fn))
lapply(tm, function(P) { y[P, drop=FALSE] })
} else {
tm = timeMatch(ix, iy, returnList = FALSE)
if (is.null(fn)) { # get first match:
if (any(is.na(tm))) { # will lead to error, because [.xts doesn't handle NA's
nas = which(is.na(tm))
tm[nas] = nas
y[nas,] = NA
}
y[tm,]
} else {
l = lapply(tm, function(P) { apply(y[P, drop=FALSE], 2, fn, ...) })
ret = do.call(rbind, l)
xts(ret, ix)
}
}
}
setMethod("over", signature(x = "xts", y = "xts"), over.xts)
# y = STF:
over.STF.STF = function(x, y, returnList = FALSE, fn = NULL, ...) {
if (returnList) {
space.index = over(x@sp, y@sp, returnList = TRUE)
time.index = timeMatch(x, y, returnList = TRUE)
n = length(y@sp)
lst = vector("list", length(space.index) * length(time.index))
k = 1
for (i in seq(along = time.index)) {
for (j in seq(along = space.index)) {
nj = length(space.index[[j]])
if (length(time.index[[i]]) == 0 ||
length(space.index[[j]]) == 0)
lst[[k]] = integer(0)
else
lst[[k]] = rep((time.index[[i]] - 1) * n, each = nj) +
space.index[[j]]
k = k + 1
}
}
lst
} else {
space.index = over(x@sp, y@sp)
time.index = rep(timeMatch(x, y), each = length(space.index))
# compute the index of x in y as y is STF:
(time.index - 1) * length(y@sp) + space.index # space.index gets recycled
}
}
setMethod("over", signature(x = "STF", y = "STF"), over.STF.STF)
over.STS.STF = function(x, y, returnList = FALSE, fn = NULL, ...) {
space.index = over(x@sp, y@sp)[x@index[,1]]
time.index = timeMatch(x, y)[x@index[,2]]
# compute the index of x in y as y is STF:
idx = (time.index - 1) * length(y@sp) + space.index
.index2list(idx, returnList)
}
setMethod("over", signature(x = "STS", y = "STF"), over.STS.STF)
over.STI.STF = function(x, y, returnList = FALSE, fn = NULL, ...) {
#if (returnList) warning("returnList not supported yet")
space.index = over(x@sp, y@sp)
time.index = timeMatch(x, y, returnList)
# compute the index of x in y as y is STF:
idx = (unlist(time.index) - 1) * length(y@sp) + unlist(space.index)
.index2list(idx, returnList)
}
setMethod("over", signature(x = "STI", y = "STF"), over.STI.STF)
# y = STI:
over.STF.STI = function(x, y, returnList = FALSE, fn = NULL, ...)
over(as(x, "STS"), y, returnList = returnList, fn=fn, ...)
setMethod("over", signature(x = "STF", y = "STI"), over.STF.STI)
over.STS.STI = function(x, y, returnList = FALSE, fn = NULL, ...)
over(as(x, "STI"), y, returnList = returnList, fn=fn, ...)
setMethod("over", signature(x = "STS", y = "STI"), over.STS.STI)
over.STI.STI = function(x, y, returnList = FALSE, fn = NULL, ...) {
#if (returnList) warning("returnList not fully supported yet")
lst = list(index(x@time), index(y@time), returnList = TRUE)
if (any(x@endTime > as.POSIXct(index(x@time))))
lst[["end.x"]] = x@endTime
if (any(y@endTime > as.POSIXct(index(y@time))))
lst[["end.y"]] = y@endTime
#print(lst)
time.index = do.call(timeMatch, lst)
#print(time.index)
ret = lapply(1:length(time.index), function(i) {
ti = time.index[[i]] # the x[i] matching y entry indices
if (length(ti) > 0)
over(x@sp[i,], y@sp[ti,], returnList = TRUE)[[1]] + (ti - 1)
else
integer(0)
})
if (! returnList)
ret = unlist(lapply(ret, function(x) { x[1] }))
ret
}
setMethod("over", signature(x = "STI", y = "STI"), over.STI.STI)
# y = STS:
over.ST.STS = function(x, y, returnList = FALSE, fn = NULL, ...) {
if (returnList) warning("returnList not fully supported yet")
ret = over(x, STF(y@sp, y@time), returnList = returnList, fn = fn)
ix.sts = (y@index[,2] - 1) * length(y@sp) + y@index[,1]
ix.stf = rep(as.integer(NA), nrow(y@time) * length(y@sp))
ix.stf[ix.sts] = 1:nrow(y@index)
ix.stf[ret]
}
setMethod("over", signature(x = "ST", y = "STS"), over.ST.STS)
overDFGenericST = function(x, y, returnList = FALSE, fn = NULL, ...) {
stopifnot(identical(proj4string(x),proj4string(y)))
if (is.null(fn) && !returnList) {
r = over(x, geometry(y), returnList = FALSE)
ret = y@data[r,,drop=FALSE]
} else {
r = over(x, geometry(y), returnList = TRUE)
ret = sp:::.overDF(r, y@data, length(x), returnList, fn, ...)
}
if (!returnList)
row.names(ret) = row.names(x)
ret
}
setMethod("over", signature(x = "STF", y = "STFDF"), overDFGenericST)
setMethod("over", signature(x = "STS", y = "STFDF"), overDFGenericST)
setMethod("over", signature(x = "STI", y = "STFDF"), overDFGenericST)
setMethod("over", signature(x = "STF", y = "STSDF"), overDFGenericST)
setMethod("over", signature(x = "STS", y = "STSDF"), overDFGenericST)
setMethod("over", signature(x = "STI", y = "STSDF"), overDFGenericST)
setMethod("over", signature(x = "STF", y = "STIDF"), overDFGenericST)
setMethod("over", signature(x = "STS", y = "STIDF"), overDFGenericST)
setMethod("over", signature(x = "STI", y = "STIDF"), overDFGenericST)