https://github.com/mccoy-lab/transmission-distortion
Tip revision: d30bde24ca6d385036b88527c66a4a7d6261f8a5 authored by Andrew Bortvin on 26 July 2022, 19:38:01 UTC
adding investigate_homozigosity.R
adding investigate_homozigosity.R
Tip revision: d30bde2
| File | Mode | Size |
|---|---|---|
| filtering_bell_data | ||
| full_donors | ||
| full_filtering | ||
| plink | ||
| plotting | ||
| recombination_breaks | ||
| rhapsodi_benchmarking | ||
| run_plink | ||
| shell-scripts | ||
| sim-scripts | ||
| sperm-data | ||
| test_data_rhapsodi_gen | ||
| README.md | -rw-r--r-- | 8.8 KB |
| compare_plot_recombination.R | -rw-r--r-- | 11.7 KB |
| filter_rhapsodi_TDscan.R | -rw-r--r-- | 10.7 KB |
| filtering-td-data.R | -rw-r--r-- | 5.8 KB |
| get_sim_stats.R | -rw-r--r-- | 3.4 KB |
| get_snps_prune.R | -rw-r--r-- | 769 bytes |
| get_stats.R | -rw-r--r-- | 5.2 KB |
| hapi_benchmarking.R | -rw-r--r-- | 14.0 KB |
| informative_transmissions_TDT.R | -rw-r--r-- | 2.5 KB |
| investigate_homozygosity.R | -rw-r--r-- | 3.1 KB |
| make_filteredsnp_beds.R | -rw-r--r-- | 1.1 KB |
| outcome_new2.txt | -rw-r--r-- | 35.5 MB |
| plot_pval_csv.R | -rw-r--r-- | 1.6 KB |
| power_analysis_sperm.R | -rw-r--r-- | 4.0 KB |
| power_for_TDT.R | -rw-r--r-- | 2.4 KB |
| slurm_filter_rhapsodi_TDscan.sh | -rw-r--r-- | 1.1 KB |
| snpcoverage_bedtools.sh | -rwxr-xr-x | 919 bytes |
| submit_slurm_filter_rhapsodi_TDscan.sh | -rw-r--r-- | 437 bytes |
