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https://github.com/TorkamaniLab/Imputation_Autoencoder
05 October 2022, 09:56:38 UTC
History
Tip revision: 35d2e292e786ebc41e71f27809dad56b1e1933c4 authored by Raquel Dias on 26 May 2022, 19:09:03 UTC
Merge pull request #42 from frobnitzem/tile_test
Tip revision: 35d2e29
File Mode Size
tools
vmv_profiling
0_configure_models.sbatch -rw-r--r-- 1021 bytes
0_configure_models.sh -rw-r--r-- 3.2 KB
1000_random_hyperparameters.tsv -rw-r--r-- 69.7 KB
1000_random_hyperparameters_500e.sh -rw-r--r-- 367.4 KB
1_train_GS.sh -rwxr-xr-x 5.1 KB
1_train_GS_a100.sbatch -rw-r--r-- 2.3 KB
1_train_GS_titanv.sbatch -rw-r--r-- 2.3 KB
1_train_GS_v100.sbatch -rw-r--r-- 2.3 KB
2_generate_validation_commands.sh -rw-r--r-- 4.2 KB
2_pick_best_model_for_full_training.sh -rw-r--r-- 2.0 KB
2_validate_and_select_best.sbatch -rw-r--r-- 800 bytes
2_validate_and_select_best.sh -rw-r--r-- 546 bytes
3_train_best_model.sh -rw-r--r-- 3.7 KB
3_train_best_model_a100.sbatch -rw-r--r-- 1.4 KB
3_train_custom_best_model.sh -rw-r--r-- 5.0 KB
3_train_custom_best_model_a100.sbatch -rw-r--r-- 2.0 KB
3_train_custom_best_model_titan.sbatch -rw-r--r-- 2.0 KB
3_train_custom_best_model_v100.sbatch -rw-r--r-- 2.0 KB
4_validate_full_training.sbatch -rw-r--r-- 798 bytes
4_validate_full_training.sh -rw-r--r-- 2.0 KB
Compare_imputation_to_WGS.py -rw-r--r-- 39.9 KB
DSAE_TORCH_ARG.py -rw-r--r-- 30.6 KB
README.md -rw-r--r-- 3.7 KB
configure_logging.py -rw-r--r-- 1.9 KB
genotype_conversions.py -rw-r--r-- 1.4 KB
inference_function.py -rw-r--r-- 15.1 KB
input.cfg -rw-r--r-- 1.0 KB
make_evaluation_commands.sh -rw-r--r-- 1.6 KB
make_inference_commands.sh -rw-r--r-- 1.7 KB
plot_evaluation_results_per_variant.R -rw-r--r-- 9.3 KB

README.md

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