File | Mode | Size |
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.gitattributes | -rw-r--r-- | 66 bytes |
ORF_length.R | -rw-r--r-- | 9.0 KB |
ORF_length_heatmap_data.tsv | -rw-r--r-- | 2.5 MB |
README.md | -rw-r--r-- | 18.4 KB |
SARS-related-CoV_ALN.gtf | -rw-r--r-- | 1.2 KB |
aligned_fasta2haplotypes.pl | -rwxr-xr-x | 10.9 KB |
extract_fasta_by_sites.pl | -rwxr-xr-x | 8.0 KB |
extract_seq_subset.py | -rwxr-xr-x | 2.3 KB |
filter_VCF.py | -rwxr-xr-x | 10.4 KB |
frameshift_results.txt | -rw-r--r-- | 9.2 KB |
generate_random_protein.py | -rwxr-xr-x | 2.8 KB |
generate_seqs_from_VCF.py | -rwxr-xr-x | 7.8 KB |
riboseq_sliding_window.R | -rw-r--r-- | 8.1 KB |
summarize_intrahost_by_site.py | -rwxr-xr-x | 26.0 KB |
tally_epitope_coverage.py | -rwxr-xr-x | 3.1 KB |
translate_nt_seq_file.pl | -rwxr-xr-x | 6.1 KB |