https://github.com/dbackenroth/embryo_selection
Tip revision: c65bf082fcb28434c271260560c4a4450dad76a3 authored by Daniel Backenroth on 02 September 2021, 01:29:35 UTC
readme
readme
Tip revision: c65bf08
| File | Mode | Size |
|---|---|---|
| two_diseases | ||
| .gitignore | -rw-r--r-- | 32 bytes |
| LICENSE | -rw-r--r-- | 1.0 KB |
| README.md | -rw-r--r-- | 76 bytes |
| Results.zip | -rw-r--r-- | 888.0 KB |
| bgzip.sh | -rwxr-xr-x | 269 bytes |
| calculate_scores.sh | -rwxr-xr-x | 767 bytes |
| calculate_scores_children.sh | -rwxr-xr-x | 427 bytes |
| calculate_scores_children_crohns.sh | -rwxr-xr-x | 434 bytes |
| children.def | -rw-r--r-- | 27 bytes |
| clump_vcf.sh | -rwxr-xr-x | 592 bytes |
| collect_scores.R | -rw-r--r-- | 379 bytes |
| concat.sh | -rwxr-xr-x | 509 bytes |
| conditional_on_parents.R | -rw-r--r-- | 917 bytes |
| convert_to_vcf.sh | -rwxr-xr-x | 438 bytes |
| count_overlapping_snps.R | -rw-r--r-- | 968 bytes |
| crohns_history | -rw-r--r-- | 1.9 KB |
| crohns_logs | -rw-r--r-- | 918 bytes |
| do_recombine.sh | -rwxr-xr-x | 182 bytes |
| embryo_selection_sims.R | -rw-r--r-- | 9.8 KB |
| explore_score_variance.R | -rw-r--r-- | 7.7 KB |
| get_maps.sh | -rwxr-xr-x | 582 bytes |
| helpers.R | -rw-r--r-- | 7.5 KB |
| history | -rw-r--r-- | 772 bytes |
| ped_sims.sh | -rwxr-xr-x | 598 bytes |
| phase.sh | -rwxr-xr-x | 824 bytes |
| prep_gwas_crohns.R | -rw-r--r-- | 968 bytes |
| prep_gwas_schiz.R | -rw-r--r-- | 976 bytes |
| recombine.R | -rw-r--r-- | 6.2 KB |
| remove_ambiguous_snps.sh | -rwxr-xr-x | 715 bytes |
| schiz_history | -rw-r--r-- | 886 bytes |
| score_analysis.R | -rw-r--r-- | 3.0 KB |
| select_couples.R | -rw-r--r-- | 613 bytes |
| selected_couples.csv | -rw-r--r-- | 996.1 KB |
| selected_couples_crohns.csv | -rw-r--r-- | 645.1 KB |
| selected_couples_old.csv | -rw-r--r-- | 99.6 KB |
| selected_couples_schiz.csv | -rw-r--r-- | 996.1 KB |
| sort_vcf.sh | -rwxr-xr-x | 333 bytes |
