https://github.com/katholt/RedDog
History
Tip revision: 90707ace56d6189997526273cf97013d84b84d90 authored by kelwyres on 18 February 2021, 21:57:16 UTC
updated snpTable2GenomeAlignment.py to python 3 version
Tip revision: 90707ac
File Mode Size
docs
.gitignore -rw-r--r-- 70 bytes
README.txt -rwxr-xr-x 12.1 KB
RedDog.py -rwxr-xr-x 130.2 KB
RedDog_config.py -rwxr-xr-x 18.3 KB
RedDog_config_massive.py -rwxr-xr-x 18.8 KB
checkBam.py -rwxr-xr-x 1.2 KB
checkpoint.py -rwxr-xr-x 822 bytes
collateAllRepGeneCover.py -rwxr-xr-x 2.2 KB
collateAllStats.py -rwxr-xr-x 2.4 KB
collateMergeStats.py -rwxr-xr-x 3.2 KB
collateRepAlleleMatrix.py -rwxr-xr-x 2.0 KB
collateRepStats.py -rwxr-xr-x 2.8 KB
convertGenbankToFasta.py -rwxr-xr-x 974 bytes
deriveAllRepGeneCover.py -rwxr-xr-x 5.1 KB
deriveAllStats.py -rwxr-xr-x 3.3 KB
deriveRepAlleleMatrix.py -rwxr-xr-x 3.8 KB
deriveRepStats.py -rwxr-xr-x 3.8 KB
errorcheck.txt -rwxr-xr-x 1.6 KB
filterCoords.py -rwxr-xr-x 2.3 KB
finalFilter.py -rwxr-xr-x 1.6 KB
generate_sequence_list.py -rwxr-xr-x 1.2 KB
getCoverByRep.py -rwxr-xr-x 2.1 KB
getRecomb.R -rwxr-xr-x 4.6 KB
getRepSNPList.py -rwxr-xr-x 3.2 KB
getVcfStats.py -rwxr-xr-x 927 bytes
get_cover.py -rwxr-xr-x 10.7 KB
makeDir.py -rwxr-xr-x 1.1 KB
make_distance_matrix.py -rwxr-xr-x 4.5 KB
make_no_tree.py -rwxr-xr-x 578 bytes
mergeAllRepGeneCover.py -rwxr-xr-x 3.0 KB
mergeAllStats.py -rwxr-xr-x 1.7 KB
mergeRepStats.py -rwxr-xr-x 3.8 KB
parseGeneContent.py -rwxr-xr-x 9.6 KB
parseSNPtable.py -rw-r--r-- 42.8 KB
pipe_utils.py -rwxr-xr-x 17.1 KB
plotTree.R -rwxr-xr-x 8.9 KB
snpTable2GenomeAlignment.py -rwxr-xr-x 1.7 KB
update_gingr_vcf.py -rwxr-xr-x 3.1 KB

README.txt

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