https://github.com/katholt/RedDog
Tip revision: 90707ace56d6189997526273cf97013d84b84d90 authored by kelwyres on 18 February 2021, 21:57:16 UTC
updated snpTable2GenomeAlignment.py to python 3 version
updated snpTable2GenomeAlignment.py to python 3 version
Tip revision: 90707ac
File | Mode | Size |
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docs | ||
.gitignore | -rw-r--r-- | 70 bytes |
README.txt | -rwxr-xr-x | 12.1 KB |
RedDog.py | -rwxr-xr-x | 130.2 KB |
RedDog_config.py | -rwxr-xr-x | 18.3 KB |
RedDog_config_massive.py | -rwxr-xr-x | 18.8 KB |
checkBam.py | -rwxr-xr-x | 1.2 KB |
checkpoint.py | -rwxr-xr-x | 822 bytes |
collateAllRepGeneCover.py | -rwxr-xr-x | 2.2 KB |
collateAllStats.py | -rwxr-xr-x | 2.4 KB |
collateMergeStats.py | -rwxr-xr-x | 3.2 KB |
collateRepAlleleMatrix.py | -rwxr-xr-x | 2.0 KB |
collateRepStats.py | -rwxr-xr-x | 2.8 KB |
convertGenbankToFasta.py | -rwxr-xr-x | 974 bytes |
deriveAllRepGeneCover.py | -rwxr-xr-x | 5.1 KB |
deriveAllStats.py | -rwxr-xr-x | 3.3 KB |
deriveRepAlleleMatrix.py | -rwxr-xr-x | 3.8 KB |
deriveRepStats.py | -rwxr-xr-x | 3.8 KB |
errorcheck.txt | -rwxr-xr-x | 1.6 KB |
filterCoords.py | -rwxr-xr-x | 2.3 KB |
finalFilter.py | -rwxr-xr-x | 1.6 KB |
generate_sequence_list.py | -rwxr-xr-x | 1.2 KB |
getCoverByRep.py | -rwxr-xr-x | 2.1 KB |
getRecomb.R | -rwxr-xr-x | 4.6 KB |
getRepSNPList.py | -rwxr-xr-x | 3.2 KB |
getVcfStats.py | -rwxr-xr-x | 927 bytes |
get_cover.py | -rwxr-xr-x | 10.7 KB |
makeDir.py | -rwxr-xr-x | 1.1 KB |
make_distance_matrix.py | -rwxr-xr-x | 4.5 KB |
make_no_tree.py | -rwxr-xr-x | 578 bytes |
mergeAllRepGeneCover.py | -rwxr-xr-x | 3.0 KB |
mergeAllStats.py | -rwxr-xr-x | 1.7 KB |
mergeRepStats.py | -rwxr-xr-x | 3.8 KB |
parseGeneContent.py | -rwxr-xr-x | 9.6 KB |
parseSNPtable.py | -rw-r--r-- | 42.8 KB |
pipe_utils.py | -rwxr-xr-x | 17.1 KB |
plotTree.R | -rwxr-xr-x | 8.9 KB |
snpTable2GenomeAlignment.py | -rwxr-xr-x | 1.7 KB |
update_gingr_vcf.py | -rwxr-xr-x | 3.1 KB |