Revision 39a091d1fa569a7fc717ac73c4b3de07f0a1204d authored by fjruizruano on 03 August 2023, 11:48:27 UTC, committed by fjruizruano on 03 August 2023, 11:48:27 UTC
1 parent ccdbd0a
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FastA.split.pl | -rwxr-xr-x | 1.1 KB |
FastQ.split.pl | -rwxr-xr-x | 1.1 KB |
LICENSE | -rw-r--r-- | 34.3 KB |
README.md | -rw-r--r-- | 10.0 KB |
SE_deconseq_run.py | -rwxr-xr-x | 3.0 KB |
SE_rexp_prepare.py | -rwxr-xr-x | 2.7 KB |
alignment_copy_paste.py | -rwxr-xr-x | 722 bytes |
annot_to_rexp.py | -rwxr-xr-x | 854 bytes |
bam_consensus.py | -rwxr-xr-x | 1.2 KB |
bam_coverage_join.py | -rwxr-xr-x | 1.3 KB |
bam_var_join.py | -rwxr-xr-x | 1.3 KB |
bg_count.py | -rwxr-xr-x | 764 bytes |
blat_recursive.py | -rwxr-xr-x | 1.5 KB |
blat_recursive_hard.py | -rwxr-xr-x | 1.4 KB |
bowtie2_protocol.py | -rwxr-xr-x | 1.6 KB |
bowtie2_recursive.py | -rwxr-xr-x | 1.5 KB |
bwa_mem_protocol.py | -rwxr-xr-x | 1.4 KB |
bwa_protocol.py | -rwxr-xr-x | 1.6 KB |
cd_hit_count_clusters.py | -rwxr-xr-x | 1.6 KB |
cd_hit_filter_size.py | -rwxr-xr-x | 1.6 KB |
count_acgtn.py | -rwxr-xr-x | 685 bytes |
count_bases_fastq.py | -rwxr-xr-x | 1.1 KB |
count_kmer.py | -rwxr-xr-x | 591 bytes |
count_reads_bam.py | -rwxr-xr-x | 738 bytes |
coverage_graphics.py | -rwxr-xr-x | 15.5 KB |
coverage_graphics_coord.py | -rwxr-xr-x | 8.8 KB |
coverage_seq_bed.py | -rwxr-xr-x | 1.1 KB |
coverage_window.py | -rwxr-xr-x | 1.5 KB |
cut_seq_unequal.py | -rwxr-xr-x | 370 bytes |
deconseq_run.py | -rwxr-xr-x | 3.8 KB |
dimerator.py | -rwxr-xr-x | 658 bytes |
divnuc_bam.py | -rwxr-xr-x | 3.3 KB |
divnuc_plot.py | -rwxr-xr-x | 795 bytes |
divsum_ab.py | -rwxr-xr-x | 3.4 KB |
divsum_analysis.py | -rwxr-xr-x | 974 bytes |
divsum_count.py | -rwxr-xr-x | 1.0 KB |
divsum_join_annot.py | -rwxr-xr-x | 1.2 KB |
divsum_stats.py | -rwxr-xr-x | 3.0 KB |
divsum_to_rl.py | -rwxr-xr-x | 8.7 KB |
dnapipete_createdb.py | -rwxr-xr-x | 980 bytes |
ecopcr_db.py | -rwxr-xr-x | 824 bytes |
extract_barcoded_reads_from_bam.py | -rwxr-xr-x | 1.9 KB |
extract_gfa.py | -rwxr-xr-x | 2.1 KB |
extract_member_reads_rexp.py | -rwxr-xr-x | 1.0 KB |
extract_no_seq.py | -rwxr-xr-x | 906 bytes |
extract_reads_blat.py | -rwxr-xr-x | 356 bytes |
extract_reads_rm.py | -rwxr-xr-x | 503 bytes |
extract_regions_bam.py | -rwxr-xr-x | 873 bytes |
extract_seq.py | -rwxr-xr-x | 857 bytes |
extract_seq_bam.py | -rwxr-xr-x | 1.3 KB |
extract_seq_len.py | -rwxr-xr-x | 839 bytes |
extract_seq_regions.py | -rwxr-xr-x | 1.1 KB |
fasta_filter_by_length.py | -rwxr-xr-x | 1.1 KB |
fasta_sequence_len.py | -rwxr-xr-x | 335 bytes |
fastq-combine-pe.py | -rwxr-xr-x | 3.8 KB |
fastq-pe-random.py | -rwxr-xr-x | 1.4 KB |
fastq_edit_ids.py | -rwxr-xr-x | 2.3 KB |
fastq_edit_ids_sra.py | -rwxr-xr-x | 1.9 KB |
fastq_paired_combine_id.py | -rwxr-xr-x | 1.3 KB |
find_exclusive_kmers.py | -rwxr-xr-x | 1.3 KB |
gatk_protocol.py | -rwxr-xr-x | 2.9 KB |
get_coordinates.py | -rwxr-xr-x | 459 bytes |
get_no_blat.py | -rwxr-xr-x | 559 bytes |
get_shared_pw_shared_sunks.py | -rwxr-xr-x | 1.4 KB |
get_var_library.py | -rwxr-xr-x | 658 bytes |
gfa2fas.py | -rwxr-xr-x | 357 bytes |
gff_creator.py | -rwxr-xr-x | 305 bytes |
id_rmasker.py | -rwxr-xr-x | 296 bytes |
id_rmasker_rexp.py | -rwxr-xr-x | 384 bytes |
join_multiple_lists.py | -rwxr-xr-x | 734 bytes |
join_multiple_lists_noheader.py | -rwxr-xr-x | 734 bytes |
join_multiple_lists_var.py | -rwxr-xr-x | 827 bytes |
join_rm_list.py | -rwxr-xr-x | 745 bytes |
kimura_window.py | -rwxr-xr-x | 2.1 KB |
kmer_to_fasta.py | -rwxr-xr-x | 219 bytes |
longranger_prepare_reference.py | -rwxr-xr-x | 1.0 KB |
mapping_blat_gs.py | -rwxr-xr-x | 5.4 KB |
mapping_blat_gs_hard.py | -rwxr-xr-x | 5.4 KB |
mapping_blat_gs_light.py | -rwxr-xr-x | 5.7 KB |
mapping_blat_gs_nonormal.py | -rwxr-xr-x | 5.5 KB |
mapping_blat_gs_saver.py | -rwxr-xr-x | 9.9 KB |
mapping_blat_gs_single_end.py | -rwxr-xr-x | 2.8 KB |
massive_phylogenies_figure.py | -rwxr-xr-x | 1021 bytes |
massive_phylogeny.py | -rwxr-xr-x | 1.7 KB |
massive_phylogeny_raxml_support.py | -rwxr-xr-x | 1.4 KB |
mitobim_run.py | -rwxr-xr-x | 3.6 KB |
mreps_extract.py | -rwxr-xr-x | 1.0 KB |
novoplasty_run.py | -rw-r--r-- | 1.6 KB |
peru_protocol.py | -rwxr-xr-x | 1.9 KB |
raxml_protocol.py | -rwxr-xr-x | 1.6 KB |
reduce_bam.py | -rwxr-xr-x | 1022 bytes |
remove_ns.py | -rwxr-xr-x | 392 bytes |
repeat_landscape_decimal.py | -rwxr-xr-x | 1.6 KB |
repeat_landscape_decimal_050.py | -rwxr-xr-x | 1.7 KB |
repeat_masker_run.py | -rwxr-xr-x | 328 bytes |
repeat_masker_run_big.py | -rwxr-xr-x | 2.1 KB |
repeat_masker_run_big_microsat.py | -rwxr-xr-x | 1.4 KB |
replace_patterns.py | -rwxr-xr-x | 574 bytes |
rexp_annot.py | -rwxr-xr-x | 1.0 KB |
rexp_get_contigs.py | -rwxr-xr-x | 1.1 KB |
rexp_get_contigs_re2.py | -rwxr-xr-x | 1.1 KB |
rexp_prepare.py | -rwxr-xr-x | 3.7 KB |
rexp_prepare_deconseq.py | -rwxr-xr-x | 3.1 KB |
rexp_prepare_normaltag.py | -rwxr-xr-x | 3.7 KB |
rexp_select_contigs.py | -rwxr-xr-x | 870 bytes |
rm_clas_seq.py | -rwxr-xr-x | 1.1 KB |
rm_clas_seq_names.py | -rwxr-xr-x | 2.1 KB |
rm_cluster_external.py | -rwxr-xr-x | 6.0 KB |
rm_count_matches.py | -rwxr-xr-x | 935 bytes |
rm_count_matches_monomers.py | -rwxr-xr-x | 1.2 KB |
rm_getseq.py | -rwxr-xr-x | 1.4 KB |
rm_getseq_annot.py | -rwxr-xr-x | 1.4 KB |
rm_getseq_split.py | -rwxr-xr-x | 2.5 KB |
rm_getseq_stats.py | -rwxr-xr-x | 1.8 KB |
rm_homology.py | -rwxr-xr-x | 1.5 KB |
rm_homology_v2.py | -rwxr-xr-x | 3.6 KB |
rm_join_out.py | -rwxr-xr-x | 1.4 KB |
rm_join_tbl.py | -rwxr-xr-x | 546 bytes |
run_abyss.py | -rwxr-xr-x | 1.8 KB |
sat_cross_libraries.py | -rwxr-xr-x | 1.1 KB |
sat_cutter.py | -rwxr-xr-x | 1.5 KB |
sat_subfam2fam.py | -rwxr-xr-x | 649 bytes |
sat_subfam2fam_multi.py | -rwxr-xr-x | 1.3 KB |
sat_subfam2fam_multi_support.py | -rwxr-xr-x | 565 bytes |
satminer_quant.py | -rwxr-xr-x | 1.5 KB |
search_issr_1nt.py | -rwxr-xr-x | 989 bytes |
search_issr_2nt.py | -rwxr-xr-x | 989 bytes |
sequence_ref_alt.py | -rwxr-xr-x | 1.1 KB |
snp_calling_bchr.py | -rwxr-xr-x | 2.5 KB |
snp_calling_bchr_z10.py | -rwxr-xr-x | 2.5 KB |
snp_calling_dn_ds.py | -rwxr-xr-x | 1.3 KB |
split_illumina.py | -rwxr-xr-x | 735 bytes |
sra_download.py | -rwxr-xr-x | 452 bytes |
ssaha2_run.py | -rwxr-xr-x | 2.2 KB |
ssaha2_run_multi.py | -rwxr-xr-x | 4.2 KB |
ssaha2_run_multi_id99_len80.py | -rwxr-xr-x | 3.7 KB |
ssaha2_run_multi_pe_se.py | -rwxr-xr-x | 7.3 KB |
ssaha2_run_multi_se.py | -rwxr-xr-x | 3.3 KB |
stampy_protocol.py | -rwxr-xr-x | 1.1 KB |
subsampler.py | -rwxr-xr-x | 1.2 KB |
taxonomy_retrieve.py | -rwxr-xr-x | 784 bytes |
trinity_extract_longest.py | -rwxr-xr-x | 864 bytes |
trinity_extract_longest2.py | -rwxr-xr-x | 864 bytes |
trinotate_auto.py | -rwxr-xr-x | 3.1 KB |
trna_clustering.py | -rwxr-xr-x | 1.3 KB |
unshuffle.py | -rwxr-xr-x | 669 bytes |
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