grammar.i
/**********************************************/
/* BEGIN interface for grammar extensions */
/**********************************************/
%extend vrna_fold_compound_t {
#include <string>
#include <cstring>
#ifdef SWIGPYTHON
%feature("autodoc") ud_add_motif;
%feature("kwargs") ud_add_motif;
#endif
void
ud_add_motif(std::string motif,
double motif_en,
std::string name="",
unsigned int options = VRNA_UNSTRUCTURED_DOMAIN_ALL_LOOPS)
{
if (name == "")
vrna_ud_add_motif($self, motif.c_str(), motif_en, NULL, options);
else
vrna_ud_add_motif($self, motif.c_str(), motif_en, name.c_str(), options);
}
void
ud_remove(void)
{
vrna_ud_remove($self);
}
}
%constant unsigned int UNSTRUCTURED_DOMAIN_EXT_LOOP = VRNA_UNSTRUCTURED_DOMAIN_EXT_LOOP;
%constant unsigned int UNSTRUCTURED_DOMAIN_HP_LOOP = VRNA_UNSTRUCTURED_DOMAIN_HP_LOOP;
%constant unsigned int UNSTRUCTURED_DOMAIN_INT_LOOP = VRNA_UNSTRUCTURED_DOMAIN_INT_LOOP;
%constant unsigned int UNSTRUCTURED_DOMAIN_MB_LOOP = VRNA_UNSTRUCTURED_DOMAIN_MB_LOOP;
%constant unsigned int UNSTRUCTURED_DOMAIN_ALL_LOOPS = VRNA_UNSTRUCTURED_DOMAIN_ALL_LOOPS;
%constant unsigned int UNSTRUCTURED_DOMAIN_MOTIF = VRNA_UNSTRUCTURED_DOMAIN_MOTIF;
%include <ViennaRNA/grammar.h>
%include <ViennaRNA/unstructured_domains.h>
%include <ViennaRNA/structured_domains.h>