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https://github.com/splatlab/squeakr
09 January 2021, 06:17:16 UTC
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Generate software citation in BibTex format (requires biblatex-software package)
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Tip revision: a4d4b0ebc64eec5f6862ddbff48ff1de891098ee authored by Prashant Pandey on 06 November 2018, 17:45:37 UTC
merge
Tip revision: a4d4b0e
todo.txt
count:
	- kill -p [DONE]
	- change -o to output file [DONE]
	- make -o required [DONE]
	- add argument:
	  <-e | -p num_hash_bits>
	
query:
	- make -o optional (default to stdout)
	- make -q optional (default to stdin)

inner_prod:
	- remove -a -b [DONE]

list:
	- make -o optional (default to stdout)
	- add a cutoff parameter

new command: merge
   merge <-e | -p num_hash_bits> [-c cutoff] [-n] -o <output.squeakr> <infile1.squeakr> ...

new command: filter
(same as merge, but only one input -- internally just runs merge)

new command: info [DONE]
   info <input.squeakr>
- outputs:
	- kmer size
	- version
	- exactness or num hash bits
	- number of kmers
	- number of distinct kmers
	- cutoff
	- whether counts are present
	- etc?

make squeakrconfig packed [DONE]

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