https://github.com/jefflee1103/Lee_Wing-SARS2
Tip revision: bc3e724233d321bf5599979061ffbe0cb907da03 authored by Jeff YS Lee on 17 December 2021, 14:30:30 UTC
Added immobilsied virus intensity quants
Added immobilsied virus intensity quants
Tip revision: bc3e724
README.md
## Lee & Wing 2021
### Absolute quantitation of individual SARS-CoV-2 RNA molecules: a new paradigm for infection dynamics and variant differences
This repository contains source codes for reproducing figures presented in the Lee & Wing SARS-CoV-2 smFISH manuscript [BioRxiv link](https://www.biorxiv.org/content/10.1101/2021.06.29.450133v2.full).
<img src="https://github.com/jefflee1103/Lee_Wing-SARS2/raw/main/Graphical_abstract.png" width="500" height="500">
### Data table availability
Data tables used for figure generation can be found under `smFISH/data_plotting/data/`
### Code availability
Bigfish analysis pipeline and other codes used for the image analysis can be found under
`smFISH/analysis-codes/`
Scripts used to generate the presented figures are available in the R Markdown format under
`smFISH/data_plotting/`
### Contact
<img src="https://raw.githubusercontent.com/rahuldkjain/github-profile-readme-generator/master/src/images/icons/Social/twitter.svg" width="15" height="15">[@ilandavislab](https://twitter.com/ilandavislab)
<img src="https://raw.githubusercontent.com/rahuldkjain/github-profile-readme-generator/master/src/images/icons/Social/twitter.svg" width="15" height="15">[@McKeatingLab](https://twitter.com/McKeatingLab)
<img src="https://raw.githubusercontent.com/rahuldkjain/github-profile-readme-generator/master/src/images/icons/Social/twitter.svg" width="15" height="15">[@castello_lab](https://twitter.com/castello_lab)