https://github.com/NBISweden/AGAT
History
Tip revision: 692791aa30d253bd2ff83397d0dc1a74b5b52adb authored by Jacques Dainat on 13 July 2021, 09:39:32 UTC
Update gxf.md
Tip revision: 692791a
File Mode Size
agat_convert_bed2gff.pl -rwxr-xr-x 18.4 KB
agat_convert_embl2gff.pl -rwxr-xr-x 4.4 KB
agat_convert_genscan2gff.pl -rwxr-xr-x 9.9 KB
agat_convert_mfannot2gff.pl -rwxr-xr-x 18.3 KB
agat_convert_minimap2_bam2gff.pl -rwxr-xr-x 10.6 KB
agat_convert_sp_gff2bed.pl -rwxr-xr-x 9.5 KB
agat_convert_sp_gff2gtf.pl -rwxr-xr-x 31.4 KB
agat_convert_sp_gff2tsv.pl -rwxr-xr-x 10.1 KB
agat_convert_sp_gff2zff.pl -rwxr-xr-x 6.6 KB
agat_convert_sp_gxf2gxf.pl -rwxr-xr-x 10.3 KB
agat_sp_Prokka_inferNameFromAttributes.pl -rwxr-xr-x 5.3 KB
agat_sp_add_introns.pl -rwxr-xr-x 6.7 KB
agat_sp_add_start_and_stop.pl -rwxr-xr-x 21.0 KB
agat_sp_alignment_output_style.pl -rwxr-xr-x 4.1 KB
agat_sp_clipN_seqExtremities_and_fixCoordinates.pl -rwxr-xr-x 8.2 KB
agat_sp_compare_two_BUSCOs.pl -rwxr-xr-x 13.2 KB
agat_sp_compare_two_annotations.pl -rwxr-xr-x 20.7 KB
agat_sp_complement_annotations.pl -rwxr-xr-x 7.0 KB
agat_sp_ensembl_output_style.pl -rwxr-xr-x 4.0 KB
agat_sp_extract_attributes.pl -rwxr-xr-x 8.7 KB
agat_sp_extract_sequences.pl -rwxr-xr-x 35.8 KB
agat_sp_filter_by_ORF_size.pl -rwxr-xr-x 8.2 KB
agat_sp_filter_by_locus_distance.pl -rwxr-xr-x 10.3 KB
agat_sp_filter_by_mrnaBlastValue.pl -rwxr-xr-x 6.7 KB
agat_sp_filter_feature_by_attribute_presence.pl -rwxr-xr-x 11.6 KB
agat_sp_filter_feature_by_attribute_value.pl -rwxr-xr-x 13.1 KB
agat_sp_filter_feature_from_keep_list.pl -rwxr-xr-x 10.2 KB
agat_sp_filter_feature_from_kill_list.pl -rwxr-xr-x 11.1 KB
agat_sp_filter_gene_by_intron_numbers.pl -rwxr-xr-x 8.8 KB
agat_sp_filter_gene_by_length.pl -rwxr-xr-x 10.3 KB
agat_sp_filter_incomplete_gene_coding_models.pl -rwxr-xr-x 12.9 KB
agat_sp_filter_record_by_coordinates.pl -rwxr-xr-x 9.5 KB
agat_sp_fix_cds_phases.pl -rwxr-xr-x 3.6 KB
agat_sp_fix_features_locations_duplicated.pl -rwxr-xr-x 30.3 KB
agat_sp_fix_fusion.pl -rwxr-xr-x 59.9 KB
agat_sp_fix_longest_ORF.pl -rwxr-xr-x 65.5 KB
agat_sp_fix_overlaping_genes.pl -rwxr-xr-x 12.3 KB
agat_sp_fix_small_exon_from_extremities.pl -rwxr-xr-x 11.3 KB
agat_sp_flag_premature_stop_codons.pl -rwxr-xr-x 10.5 KB
agat_sp_flag_short_introns.pl -rwxr-xr-x 11.1 KB
agat_sp_functional_statistics.pl -rwxr-xr-x 12.5 KB
agat_sp_keep_longest_isoform.pl -rwxr-xr-x 3.8 KB
agat_sp_kraken_assess_liftover.pl -rwxr-xr-x 31.1 KB
agat_sp_list_short_introns.pl -rwxr-xr-x 6.8 KB
agat_sp_load_function_from_protein_align.pl -rwxr-xr-x 47.5 KB
agat_sp_manage_IDs.pl -rwxr-xr-x 15.4 KB
agat_sp_manage_UTRs.pl -rwxr-xr-x 18.8 KB
agat_sp_manage_attributes.pl -rwxr-xr-x 10.7 KB
agat_sp_manage_functional_annotation.pl -rwxr-xr-x 46.9 KB
agat_sp_manage_introns.pl -rwxr-xr-x 11.3 KB
agat_sp_merge_annotations.pl -rwxr-xr-x 4.3 KB
agat_sp_prokka_fix_fragmented_gene_annotations.pl -rwxr-xr-x 40.5 KB
agat_sp_sensitivity_specificity.pl -rwxr-xr-x 27.4 KB
agat_sp_separate_by_record_type.pl -rwxr-xr-x 7.7 KB
agat_sp_statistics.pl -rwxr-xr-x 5.3 KB
agat_sp_webApollo_compliant.pl -rwxr-xr-x 3.4 KB
agat_sq_add_attributes_from_tsv.pl -rwxr-xr-x 5.8 KB
agat_sq_add_hash_tag.pl -rwxr-xr-x 5.0 KB
agat_sq_add_locus_tag.pl -rwxr-xr-x 6.9 KB
agat_sq_count_attributes.pl -rwxr-xr-x 3.7 KB
agat_sq_filter_feature_from_fasta.pl -rwxr-xr-x 4.3 KB
agat_sq_list_attributes.pl -rwxr-xr-x 6.3 KB
agat_sq_manage_IDs.pl -rwxr-xr-x 4.6 KB
agat_sq_manage_attributes.pl -rwxr-xr-x 11.6 KB
agat_sq_mask.pl -rwxr-xr-x 5.6 KB
agat_sq_remove_redundant_entries.pl -rwxr-xr-x 4.2 KB
agat_sq_repeats_analyzer.pl -rwxr-xr-x 6.7 KB
agat_sq_rfam_analyzer.pl -rwxr-xr-x 7.2 KB
agat_sq_split.pl -rwxr-xr-x 4.6 KB
agat_sq_stat_basic.pl -rwxr-xr-x 6.8 KB

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