https://github.com/cran/ape
Tip revision: cc31008510fa7311e058a682ac63727ea9726830 authored by Emmanuel Paradis on 16 November 2007, 00:00:00 UTC
version 2.0-2
version 2.0-2
Tip revision: cc31008
DESCRIPTION
Package: ape
Version: 2.0-2
Date: 2007-11-16
Title: Analyses of Phylogenetics and Evolution
Author: Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper,
Benoit Durand, Julien Dutheil, Olivier Gascuel, Gangolf Jobb,
Christoph Heibl, Vincent Lefort, Jim Lemon, Yvonnick Noel,
Johan Nylander, Rainer Opgen-Rhein, Emmanuel Paradis,
Korbinian Strimmer
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@mpl.ird.fr>
Depends: R (>= 2.0.0)
Suggests: gee, nlme, lattice
ZipData: no
Description: ape provides functions for reading, writing, plotting,
and manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, the population
parameter theta based on various approaches, nucleotide diversity,
generalized skyline plots, estimation of absolute evolutionary rates
and clock-like trees using mean path lengths, non-parametric rate
smoothing and penalized likelihood, classifying genes in trees using
the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
with the NJ, BIONJ, ME, and ML methods.
License: GPL version 2 or newer
URL: http://pbil.univ-lyon1.fr/R/ape/
Packaged: Fri Nov 16 12:46:37 2007; paradis