Package: ape
Version: 2.3-3
Date: 2009-09-09
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
        Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
        Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort,
        Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander,
        Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Depends: R (>= 2.6.0)
Suggests: gee
Imports: gee, nlme, lattice
ZipData: no
Description: ape provides functions for reading, writing, plotting, and
        manipulating phylogenetic trees, analyses of comparative data
        in a phylogenetic framework, analyses of diversification and
        macroevolution, computing distances from allelic and nucleotide
        data, reading nucleotide sequences, and several tools such as
        Mantel's test, computation of minimum spanning tree, the
        population parameter theta based on various approaches,
        nucleotide diversity, generalized skyline plots, estimation of
        absolute evolutionary rates and clock-like trees using mean
        path lengths, non-parametric rate smoothing and penalized
        likelihood. Phylogeny estimation can be done with the NJ,
        BIONJ, and ME methods.
License: GPL (>= 2)
URL: http://ape.mpl.ird.fr/
Packaged: 2009-09-22 14:14:19 UTC; paradis
Repository: CRAN
Date/Publication: 2009-09-22 15:00:44