https://github.com/sanger-pathogens/gubbins
Tip revision: 4a7ae96c24775a501ae9510a09afda42d888e8c0 authored by nickjcroucher on 12 October 2021, 10:26:04 UTC
Merge pull request #311 from jdaeth274/masking_aln
Merge pull request #311 from jdaeth274/masking_aln
Tip revision: 4a7ae96
environment.yml
name: gubbins_env
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
# python
- python>=3.8
# installation
- autoconf
- automake
- pytest
- check
- libtool
- cppunit
- pkg-config
- wheel
- nose
- pillow
# algorithm
- scipy
- dendropy
- biopython
- multiprocess
- numpy
# phylogenetics
- raxml=8.2.12
- iqtree=2.0.3
- rapidnj
- raxml-ng=1.0.1
- fasttree=2.1.10