https://github.com/sanger-pathogens/gubbins
Tip revision: 25184cfdafa12e862cbf7b22fbd39cd18c349fe7 authored by Christoph Püthe on 29 January 2021, 16:16:24 UTC
add workflow name for github badge
add workflow name for github badge
Tip revision: 25184cf
environment.yml
name: gubbins_env
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
# python
- python>=3.8
# installation
- autoconf
- automake
- pytest
- check
- libtool
- cppunit
- pkg-config
- wheel
- nose
- pillow
# algorithm
- scipy
- dendropy
- biopython
- multiprocess
- numpy
# phylogenetics
- raxml=8.2.12
- iqtree=2.0.3
- rapidnj
- raxml-ng=1.0.1
- fasttree=2.1.10
