https://github.com/sanger-pathogens/gubbins
Tip revision: 7f411097645679aacf0847776abaa81003cd0d73 authored by nickjcroucher on 19 January 2022, 15:54:16 UTC
Merge pull request #328 from nickjcroucher/c_mem
Merge pull request #328 from nickjcroucher/c_mem
Tip revision: 7f41109
environment.yml
name: gubbins_env
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
# python
- python>=3.8
# installation
- autoconf
- automake
- autoconf-archive
- pytest
- pytest-cov
- lcov
- check
- libtool
- cppunit
- pkg-config
- wheel
- pillow
# algorithm
- scipy
- dendropy
- biopython
- multiprocess
- numpy
- numba
# phylogenetics
- raxml=8.2.12
- iqtree=2.0.3
- rapidnj
- raxml-ng=1.0.1
- fasttree=2.1.10
