https://github.com/GPflow/GPflow
Tip revision: 457ddf89341f5ac22641eda524747fa2ad628a2f authored by Jesper Nielsen on 08 March 2022, 13:31:32 UTC
Support Optional values for check_shapes. (#1797)
Support Optional values for check_shapes. (#1797)
Tip revision: 457ddf8
config.yml
version: 2.1
parameters:
min_py_ver:
type: string
default: "3.7"
max_py_ver:
type: string
default: "3.10"
min_tf_ver:
type: string
default: "2.4"
max_tf_ver:
type: string
default: "2.8"
min_tfp_ver:
type: string
default: "0.12"
max_tfp_ver:
type: string
default: "0.16"
commands:
setup_venv:
parameters:
py_ver:
type: string
steps:
- checkout
- run:
name: Setup virtual environment
command: |
# Run in a fresh virtual environment, to avoid conflicts with preinstalled packages.
virtualenv -p python<<parameters.py_ver>> .venv
source .venv/bin/activate
pip install --progress-bar=off -U pip
install_gpflow:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
steps:
- setup_venv:
py_ver: <<parameters.py_ver>>
- run:
name: Install GPflow
command: "
source .venv/bin/activate \n
git clone --branch develop https://github.com/GPflow/GPflow.git \n
# Everything is installed in one pip command, to allow for better dependency version
# resolution. Explicit tensorflow and tensorflow-probability version, to ensure
# consistency between them. \n
pip install --progress-bar=off
-e .
-r tests_requirements.txt
tensorflow==<<parameters.tf_ver>>
tensorflow-probability==<<parameters.tfp_ver>> \n
"
run_tests:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
pytest_filter:
type: string
steps:
- install_gpflow:
py_ver: <<parameters.py_ver>>
tf_ver: <<parameters.tf_ver>>
tfp_ver: <<parameters.tfp_ver>>
- run:
name: Run tests
command: |
source .venv/bin/activate
pytest -v -W ignore::UserWarning --durations=10 -m "<<parameters.pytest_filter>>" --cov=./gpflow ./tests
- run:
name: Upload coverage report
command: |
source .venv/bin/activate
bash <(curl -s https://codecov.io/bash) -t "${CODECOV_TOKEN}"
jobs:
verify-install:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
docker:
- image: cimg/python:<<parameters.py_ver>>
steps:
- install_gpflow:
py_ver: <<parameters.py_ver>>
tf_ver: <<parameters.tf_ver>>
tfp_ver: <<parameters.tfp_ver>>
- run:
name: Check installed dependencies are compatible
command: |
source .venv/bin/activate
pip check -vvv
python -c "import gpflow"
type-check:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
docker:
- image: cimg/python:<<parameters.py_ver>>
steps:
- install_gpflow:
py_ver: <<parameters.py_ver>>
tf_ver: <<parameters.tf_ver>>
tfp_ver: <<parameters.tfp_ver>>
- run:
name: Run type check
command: |
source .venv/bin/activate
mypy gpflow tests
format-check:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
docker:
- image: cimg/python:<<parameters.py_ver>>
steps:
- install_gpflow:
py_ver: <<parameters.py_ver>>
tf_ver: <<parameters.tf_ver>>
tfp_ver: <<parameters.tfp_ver>>
- run:
name: Run format check
command: |
source .venv/bin/activate
make format-check
unit-test:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
docker:
- image: cimg/python:<<parameters.py_ver>>
steps:
- run_tests:
py_ver: <<parameters.py_ver>>
tf_ver: <<parameters.tf_ver>>
tfp_ver: <<parameters.tfp_ver>>
pytest_filter: not notebooks
notebook-test:
parameters:
py_ver:
type: string
tf_ver:
type: string
tfp_ver:
type: string
docker:
- image: cimg/python:<<parameters.py_ver>>
steps:
- run_tests:
py_ver: <<parameters.py_ver>>
tf_ver: <<parameters.tf_ver>>
tfp_ver: <<parameters.tfp_ver>>
pytest_filter: notebooks
trigger-docs-generation:
docker:
- image: cimg/python:<<pipeline.parameters.min_py_ver>>
environment:
ORGANIZATION: GPflow
PROJECT: docs
BRANCH: << pipeline.git.branch >>
steps:
- run:
name: Trigger the Build Job in Docs repo
# Compiled documentation for readthedocs are built and stored in the https://github.com/GPflow/docs/ repository
# For configuration of the doc build, see https://github.com/GPflow/docs/blob/develop/.circleci/config.yml
command: |
curl \
-u ${DOCS_TOKEN}: \
-d 'build_parameters[CIRCLE_JOB]=build' \
https://circleci.com/api/v1.1/project/github/GPflow/docs/tree/<< pipeline.git.branch >>
deploy:
docker:
- image: cimg/python:<<pipeline.parameters.min_py_ver>>
steps:
- checkout
- run:
name: Verify git tag vs. VERSION
command: |
VERSION="v$(cat VERSION | tr -d '\t\r\n ')"
if [ "$VERSION" != "$CIRCLE_TAG" ]; then
echo "The package version ($VERSION) and the latest tag version ($CIRCLE_TAG) are different"
exit 1
fi
- run:
name: Install twine
command: |
# Run in a fresh virtual environment, to avoid conflicts with preinstalled packages.
virtualenv -p python<<pipeline.parameters.min_py_ver>> .venv
source .venv/bin/activate
pip install --progress-bar=off -U pip
pip install --progress-bar=off twine
- run:
name: Init .pypirc
command: |
echo -e "[pypi]" >> ~/.pypirc
echo -e "username = artemav" >> ~/.pypirc
echo -e "password = $PYPI_PASSWORD" >> ~/.pypirc
- run:
name: Create pip package
command: |
source .venv/bin/activate
python setup.py bdist_wheel sdist
- run:
name: Upload to PyPI
command: |
source .venv/bin/activate
twine upload dist/*
workflows:
version: 2.1
build_test_and_deploy:
jobs:
- verify-install:
name: verify-install-min
py_ver: <<pipeline.parameters.min_py_ver>>
tf_ver: <<pipeline.parameters.min_tf_ver>>
tfp_ver: <<pipeline.parameters.min_tfp_ver>>
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- verify-install:
name: verify-install-max
py_ver: <<pipeline.parameters.max_py_ver>>
tf_ver: <<pipeline.parameters.max_tf_ver>>
tfp_ver: <<pipeline.parameters.max_tfp_ver>>
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- type-check:
name: type-check-min
py_ver: <<pipeline.parameters.min_py_ver>>
tf_ver: <<pipeline.parameters.min_tf_ver>>
tfp_ver: <<pipeline.parameters.min_tfp_ver>>
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- type-check:
name: type-check-max
py_ver: <<pipeline.parameters.max_py_ver>>
tf_ver: <<pipeline.parameters.max_tf_ver>>
tfp_ver: <<pipeline.parameters.max_tfp_ver>>
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- format-check:
name: format-check-min
py_ver: <<pipeline.parameters.min_py_ver>>
tf_ver: <<pipeline.parameters.min_tf_ver>>
tfp_ver: <<pipeline.parameters.min_tfp_ver>>
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- format-check:
name: format-check-max
py_ver: <<pipeline.parameters.max_py_ver>>
tf_ver: <<pipeline.parameters.max_tf_ver>>
tfp_ver: <<pipeline.parameters.max_tfp_ver>>
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- unit-test:
name: unit-test-min
py_ver: <<pipeline.parameters.min_py_ver>>
tf_ver: <<pipeline.parameters.min_tf_ver>>
tfp_ver: <<pipeline.parameters.min_tfp_ver>>
requires:
- verify-install-min
- verify-install-max
- type-check-min
- type-check-max
- format-check-min
- format-check-max
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- unit-test:
name: unit-test-max
py_ver: <<pipeline.parameters.max_py_ver>>
tf_ver: <<pipeline.parameters.max_tf_ver>>
tfp_ver: <<pipeline.parameters.max_tfp_ver>>
requires:
- verify-install-min
- verify-install-max
- type-check-min
- type-check-max
- format-check-min
- format-check-max
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- notebook-test:
name: notebook-test-min
py_ver: <<pipeline.parameters.min_py_ver>>
tf_ver: <<pipeline.parameters.min_tf_ver>>
tfp_ver: <<pipeline.parameters.min_tfp_ver>>
requires:
- verify-install-min
- verify-install-max
- type-check-min
- type-check-max
- format-check-min
- format-check-max
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- notebook-test:
name: notebook-test-max
py_ver: <<pipeline.parameters.max_py_ver>>
tf_ver: <<pipeline.parameters.max_tf_ver>>
tfp_ver: <<pipeline.parameters.max_tfp_ver>>
requires:
- verify-install-min
- verify-install-max
- type-check-min
- type-check-max
- format-check-min
- format-check-max
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
- trigger-docs-generation:
requires:
- verify-install-min
- verify-install-max
- type-check-min
- type-check-max
- format-check-min
- format-check-max
- unit-test-min
- unit-test-max
- notebook-test-min
- notebook-test-max
filters:
branches:
only:
- master
- develop
- deploy:
requires:
- verify-install-min
- verify-install-max
- type-check-min
- type-check-max
- format-check-min
- format-check-max
- unit-test-min
- unit-test-max
- notebook-test-min
- notebook-test-max
filters:
tags:
only: /^v[0-9]+(\.[0-9]+)*(-rc[0-9]+)?/
branches:
ignore: /.*/