https://github.com/isovic/graphmap
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Tip revision: afd570e7bb1c8d7bbdc88bbc4030fbea7cb454c1 authored by Ivan Sovic (T530) on 14 September 2015, 09:35:29 UTC
This version uses gapped spaced seed, but only the shape 6-1-6.
Tip revision: afd570e
INSTALL
1. Installation

You will need a recent GCC/G++ version (>=4.7) to compile the source.

To override the default compiler choice you can set GCC (or GCC_MAC on
Mac), e.g.:

    GCC=/usr/local/bin/g++ make

1.1 Linux
For a Linux release version type:
	make
If the libraries have to be recompiled on your system, type:
	make deps

To clean, type:
	make clean

One can also rebuild, which will cause clean and make to be ran sequentially:
	make rebuild


1.2 Mac
	make mac

	make cleanmac
	make rebuildmac


1.3. Compiling the debug version
	make debug

	make cleandebug
	make rebuilddebug
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