https://github.com/isovic/graphmap
Tip revision: afd570e7bb1c8d7bbdc88bbc4030fbea7cb454c1 authored by Ivan Sovic (T530) on 14 September 2015, 09:35:29 UTC
This version uses gapped spaced seed, but only the shape 6-1-6.
This version uses gapped spaced seed, but only the shape 6-1-6.
Tip revision: afd570e
INSTALL
1. Installation
You will need a recent GCC/G++ version (>=4.7) to compile the source.
To override the default compiler choice you can set GCC (or GCC_MAC on
Mac), e.g.:
GCC=/usr/local/bin/g++ make
1.1 Linux
For a Linux release version type:
make
If the libraries have to be recompiled on your system, type:
make deps
To clean, type:
make clean
One can also rebuild, which will cause clean and make to be ran sequentially:
make rebuild
1.2 Mac
make mac
make cleanmac
make rebuildmac
1.3. Compiling the debug version
make debug
make cleandebug
make rebuilddebug