https://github.com/geodynamics/citcoms
Tip revision: db34189a4cc8afa725438397e42cb391338a2f06 authored by Leif Strand on 27 July 2005, 09:06:27 UTC
Merged changes fron trunk: "[...] uniprocessor examples work again [...]".
Merged changes fron trunk: "[...] uniprocessor examples work again [...]".
Tip revision: db34189
batchcombine.py
#!/usr/bin/env python
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
#<LicenseText>
#=====================================================================
#
# CitcomS.py
# ---------------------------------
#
# Authors:
# Eh Tan, Eun-seo Choi, and Pururav Thoutireddy
# (c) California Institute of Technology 2002-2005
#
# By downloading and/or installing this software you have
# agreed to the CitcomS.py-LICENSE bundled with this software.
# Free for non-commercial academic research ONLY.
# This program is distributed WITHOUT ANY WARRANTY whatsoever.
#
#=====================================================================
#
# Copyright June 2005, by the California Institute of Technology.
# ALL RIGHTS RESERVED. United States Government Sponsorship Acknowledged.
#
# Any commercial use must be negotiated with the Office of Technology
# Transfer at the California Institute of Technology. This software
# may be subject to U.S. export control laws and regulations. By
# accepting this software, the user agrees to comply with all
# applicable U.S. export laws and regulations, including the
# International Traffic and Arms Regulations, 22 C.F.R. 120-130 and
# the Export Administration Regulations, 15 C.F.R. 730-744. User has
# the responsibility to obtain export licenses, or other export
# authority as may be required before exporting such information to
# foreign countries or providing access to foreign nationals. In no
# event shall the California Institute of Technology be liable to any
# party for direct, indirect, special, incidental or consequential
# damages, including lost profits, arising out of the use of this
# software and its documentation, even if the California Institute of
# Technology has been advised of the possibility of such damage.
#
# The California Institute of Technology specifically disclaims any
# warranties, including the implied warranties or merchantability and
# fitness for a particular purpose. The software and documentation
# provided hereunder is on an "as is" basis, and the California
# Institute of Technology has no obligations to provide maintenance,
# support, updates, enhancements or modifications.
#
#=====================================================================
#</LicenseText>
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
'''
Paste and combine Citcom data
Usage: batchcombine.py <machinefile | node-list> model-dir model-name timestep nodex nodey nodez ncap nprocx nprocy nprocz
'''
def machinefile2nodes(machinefile, totalnodes):
try:
nodelist = file(machinefile).readlines()
except IOError:
nodelist = machinefile.split()
# check the length of nodelist
n = len(nodelist)
if not n == totalnodes:
print 'WARNING: length of machinefile does not match number of processors, try to duplicate machinefile...'
if (totalnodes > n) and ((totalnodes % n) == 0):
# try to match number of processors by duplicating nodelist
nodelist *= (totalnodes / n)
else:
raise ValueError, 'incorrect machinefile size'
# generate a string of machine names
nodes = ''
for node in nodelist:
nodes += '%s ' % node.strip()
return nodes
def combine(nodes, modeldir, modelname, timestep, nodex, nodey, nodez,
ncap, nprocx, nprocy, nprocz):
import os
# paste
cmd = 'batchpaste.sh %(modeldir)s %(modelname)s %(timestep)d %(nodes)s' \
% vars()
print cmd
os.system(cmd)
# combine
cmd = 'combine.py %(modelname)s %(timestep)d %(nodex)d %(nodey)d %(nodez)d %(ncap)d %(nprocx)d %(nprocy)d %(nprocz)d' % vars()
print cmd
os.system(cmd)
# delete
cmd = 'rm %(modelname)s.[0-9]*.%(timestep)d' % vars()
print cmd
os.system(cmd)
# create .general file
cmd = 'dxgeneral.sh %(modelname)s.cap*.%(timestep)d' % vars()
print cmd
os.system(cmd)
return
if __name__ == '__main__':
import sys
if not len(sys.argv) == 12:
print __doc__
sys.exit(1)
machinefile = sys.argv[1]
modeldir = sys.argv[2]
modelname = sys.argv[3]
timestep = int(sys.argv[4])
nodex = int(sys.argv[5])
nodey = int(sys.argv[6])
nodez = int(sys.argv[7])
ncap = int(sys.argv[8])
nprocx = int(sys.argv[9])
nprocy = int(sys.argv[10])
nprocz = int(sys.argv[11])
totalnodes = nprocx * nprocy * nprocz * ncap
nodelist = machinefile2nodes(machinefile, totalnodes)
combine(nodelist, modeldir, modelname, timestep, nodex, nodey, nodez,
ncap, nprocx, nprocy, nprocz)
# version
# $Id: batchcombine.py,v 1.6.2.1 2005/06/15 20:26:34 leif Exp $
# End of file